Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data F Favero, T Joshi, AM Marquard, NJ Birkbak, M Krzystanek, Q Li, ... Annals of Oncology 26 (1), 64-70, 2015 | 772 | 2015 |
Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes AK Bentzen, AM Marquard, R Lyngaa, SK Saini, S Ramskov, M Donia, ... Nature biotechnology 34 (10), 1037-1045, 2016 | 365 | 2016 |
Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children T Lavstsen, L Turner, F Saguti, P Magistrado, TS Rask, JS Jespersen, ... Proceedings of the National Academy of Sciences 109 (26), E1791-E1800, 2012 | 322 | 2012 |
Pan-cancer analysis of genomic scar signatures associated with homologous recombination deficiency suggests novel indications for existing cancer drugs AM Marquard, AC Eklund, T Joshi, M Krzystanek, F Favero, ZC Wang, ... Biomarker research 3, 1-10, 2015 | 276 | 2015 |
CD8+ T cells from patients with narcolepsy and healthy controls recognize hypocretin neuron-specific antigens NW Pedersen, A Holm, NP Kristensen, AM Bjerregaard, AK Bentzen, ... Nature communications 10 (1), 837, 2019 | 111 | 2019 |
Neoantigen-reactive CD8+ T cells affect clinical outcome of adoptive cell therapy with tumor-infiltrating lymphocytes in melanoma NP Kristensen, C Heeke, SA Tvingsholm, A Borch, A Draghi, ... The Journal of clinical investigation 132 (2), 2022 | 110 | 2022 |
T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide–MHC complexes AK Bentzen, L Such, KK Jensen, AM Marquard, LE Jessen, NJ Miller, ... Nature biotechnology 36 (12), 1191-1196, 2018 | 106 | 2018 |
Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers SK Saini, AD Ørskov, AM Bjerregaard, A Unnikrishnan, ... Nature communications 11 (1), 5660, 2020 | 79 | 2020 |
TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen AM Marquard, NJ Birkbak, CE Thomas, F Favero, M Krzystanek, ... BMC medical genomics 8, 1-13, 2015 | 75 | 2015 |
Plasmodium falciparum expressing domain cassette 5 type PfEMP1 (DC5-PfEMP1) bind PECAM1 SS Berger, L Turner, CW Wang, JEV Petersen, M Kraft, JPA Lusingu, ... PloS one 8 (7), e69117, 2013 | 72 | 2013 |
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community J Herschend, ZBV Damholt, AM Marquard, B Svensson, SJ Sørensen, ... Scientific reports 7 (1), 16483, 2017 | 62 | 2017 |
Tumor-infiltrating T cells from clear cell renal cell carcinoma patients recognize neoepitopes derived from point and frameshift mutations UK Hansen, S Ramskov, AM Bjerregaard, A Borch, R Andersen, A Draghi, ... Frontiers in immunology 11, 373, 2020 | 38 | 2020 |
Evidence for in vitro and in vivo expression of the conserved VAR3 (type 3) plasmodium falciparum erythrocyte membrane protein 1 CW Wang, T Lavstsen, DC Bengtsson, PA Magistrado, SS Berger, ... Malaria Journal 11, 1-11, 2012 | 35 | 2012 |
Method for identification of tissue or organ localization of a tumour AM Marquard, AC Eklund, NJ Birkbak, ZI Szallasi US Patent App. 15/537,645, 2017 | 23 | 2017 |
Prediction of neoepitopes from murine sequencing data AM Bjerregaard, TK Pedersen, AM Marquard, SR Hadrup Cancer Immunology, Immunotherapy 68 (1), 159-161, 2019 | 7 | 2019 |
Quantification of within-sample genetic heterogeneity from SNP-array data P Martinez, C Kimberley, NJ BirkBak, A Marquard, Z Szallasi, TA Graham Scientific Reports 7 (1), 3248, 2017 | 6 | 2017 |
Identification and characterization of neoantigen-reactive CD8+ T cells following checkpoint blockade therapy in a pan-cancer setting KH Moss, UK Hansen, VAB de Lima, A Borch, ES Marquez, A Bjerregaard, ... bioRxiv, 2024.03. 17.585416, 2024 | 1 | 2024 |
Simultaneous identification of antigen-specificity and T cell receptor sequence in single cells A Bentzen, H Povlsen, M Kadivar, A Marquard, U Hansen, J Holm, ... Scandinavian Journal of Immunology 94 (6), 2021 | | 2021 |
Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers with low mutational burden SK Saini, A Ørskov, AM Bjerregaard, A Unnikrishnan, S Holmberg-Thydén, ... The Journal of Immunology 204 (1_Supplement), 242.14-242.14, 2020 | | 2020 |
Dissecting the T cell receptor interactions governing recognition of peptide-MHC complexes AK Bentzen, L Such, KK Jensen, AM Marquard, LE Jessen, NJ Miller, ... European Journal of Immunology 49 (Suppl. 3 SI), 1787-1787, 2019 | | 2019 |