| The sequence alignment/map format and SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... bioinformatics 25 (16), 2078-2079, 2009 | 58025 | 2009 |
| An integrated map of genetic variation from 1,092 human genomes 1000 Genomes Project Consortium Nature 491 (7422), 56, 2012 | 8528 | 2012 |
| An integrated semiconductor device enabling non-optical genome sequencing JM Rothberg, W Hinz, TM Rearick, J Schultz, W Mileski, M Davey, ... Nature 475 (7356), 348-352, 2011 | 3005 | 2011 |
| Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays N Homer, S Szelinger, M Redman, D Duggan, W Tembe, J Muehling, ... PLoS genetics 4 (8), e1000167, 2008 | 1532 | 2008 |
| A survey of sequence alignment algorithms for next-generation sequencing H Li, N Homer Briefings in bioinformatics 11 (5), 473-483, 2010 | 1266 | 2010 |
| BFAST: an alignment tool for large scale genome resequencing N Homer, B Merriman, SF Nelson PloS one 4 (11), e7767, 2009 | 749 | 2009 |
| Subgroup 1000 Genome Project Data Processing. 2009. The Sequence Alignment/Map format and SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... Bioinformatics 25 (16), 2078-2079, 2009 | 609 | 2009 |
| Identification of genetic variants using bar-coded multiplexed sequencing DW Craig, JV Pearson, S Szelinger, A Sekar, M Redman, JJ Corneveaux, ... Nature methods 5 (10), 887-893, 2008 | 470 | 2008 |
| Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel O Delaneau, J Marchini Nature communications 5 (1), 3934, 2014 | 458 | 2014 |
| Integrative annotation of variants from 1092 humans: application to cancer genomics E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ... Science 342 (6154), 1235587, 2013 | 425 | 2013 |
| U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line MJ Clark, N Homer, BD O'Connor, Z Chen, A Eskin, H Lee, B Merriman, ... PLoS genetics 6 (1), e1000832, 2010 | 392 | 2010 |
| Common sequence variants on 20q11. 22 confer melanoma susceptibility KM Brown, S MacGregor, GW Montgomery, DW Craig, ZZ Zhao, ... Nature genetics 40 (7), 838-840, 2008 | 271 | 2008 |
| Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide–polymorphism association studies JV Pearson, MJ Huentelman, RF Halperin, WD Tembe, S Melquist, ... The American Journal of Human Genetics 80 (1), 126-139, 2007 | 186 | 2007 |
| Subgroup 1000 Genome Project Data Processing. 2009 H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... The sequence alignment/map format and SAMtools. Bioinformatics 25 (16), 2078 …, 2009 | 165 | 2009 |
| An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ... Genome biology 15, 1-18, 2014 | 127 | 2014 |
| Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA N Homer, SF Nelson Genome biology 11, 1-12, 2010 | 95 | 2010 |
| A genome-wide analysis identifies genetic variants in the RELN gene associated with otosclerosis I Schrauwen, M Ealy, MJ Huentelman, M Thys, N Homer, ... The American Journal of Human Genetics 84 (3), 328-338, 2009 | 88 | 2009 |
| 449 Abecasis G, Durbin R. 2009. The sequence alignment/map format and 450 SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth Bioinformatics 25, 2078-2079, 2009 | 76 | 2009 |
| 1000 Genome Project Data Processing Subgroup1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map format and SAMtools H Li, B Handsaker, A Wysoker, T Fennell, J Ruan, N Homer, G Marth, ... Bioinformatics 25 (16), 2078-2079, 2009 | 67 | 2009 |
| Methods and systems for nucleic acid sequence analysis N Homer US Patent 8,594,951, 2013 | 60* | 2013 |
