Intron retention as a mode for RNA-seq data analysis JT Zheng, CX Lin, ZY Fang, HD Li Frontiers in genetics 11, 586, 2020 | 45 | 2020 |
TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data CX Lin, HD Li, C Deng, Y Guan, J Wang Nucleic Acids Research, 2021 | 16 | 2021 |
GTFtools: a software package for analyzing various features of gene models HD Li, CX Lin, J Zheng Bioinformatics 38 (20), 4806-4808, 2022 | 12 | 2022 |
DeepRetention: a deep learning approach for intron retention detection Z Wu, J Zheng, J Liu, C Lin, HD Li Big Data Mining and Analytics 6 (2), 115-126, 2023 | 9 | 2023 |
AlzCode: a platform for multiview analysis of genes related to Alzheimer’s disease CX Lin, HD Li, C Deng, S Erhardt, J Wang, X Peng, J Wang Bioinformatics 38 (7), 2030-2032, 2022 | 7 | 2022 |
REBET: a method to determine the number of cell clusters based on batch effect removal ZY Fang, CX Lin, YP Xu, HD Li, QS Xu Briefings in Bioinformatics 22 (6), 2021 | 5 | 2021 |
Rfcell: A gene selection approach for scrna-seq clustering based on permutation and random forest Y Zhao, ZY Fang, CX Lin, C Deng, YP Xu, HD Li Frontiers in genetics 12, 665843, 2021 | 4 | 2021 |
An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer’s disease CX Lin, HD Li, C Deng, W Liu, S Erhardt, FX Wu, XM Zhao, Y Guan, ... Briefings in Bioinformatics 23 (1), bbab522, 2022 | 3 | 2022 |
A comparison of computational approaches for intron retention. J Zheng#, C Lin#, Z Wu, H Li BIG DATA MINING AND ANALYTICS, 2021 | 3 | 2021 |
Genome-wide prediction and integrative functional characterization of Alzheimer’s disease-associated genes CX Lin, HD Li, C Deng, W Liu, S Erhardt, FX Wu, XM Zhao, J Wang, ... bioRxiv, 2021.02. 09.430536, 2021 | 3 | 2021 |
Artificial intelligence approaches for molecular representation in drug response prediction CX Lin, Y Guan, HD Li Current Opinion in Structural Biology 84, 102747, 2024 | 2 | 2024 |
Computational approaches for detecting disease-associated alternative splicing events J Liu, CX Lin, X Zhang, Z Li, W Huang, J Liu, Y Guan, HD Li Briefings in Bioinformatics 24 (3), bbad106, 2023 | 2 | 2023 |
Improving the Prediction of Disease- associated Genes by Integrating Annotated Gene Sets C Deng#, CX Lin#, HD Li IEEE International Conference on Bioinformatics and Biomedicine, 2021 | 2 | 2021 |
An Alzheimer’s disease gene prediction method based on ensemble of genome-wide association study summary statistics JH Song, CX Lin, HD Li 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 1 | 2022 |
A gene set-integrated approach for predicting disease-associated genes HD Li, C Deng, XQ Zhang, CX Lin IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (6 …, 2022 | | 2022 |