Philip Hugenholtz

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272 artigos

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Donovan ParksUniversity of QueenslandEmail confirmado em uq.edu.au
Gene W. TysonProfessor, Centre for Microbiome Research, Queensland University of TechnologyEmail confirmado em qut.edu.au
Maria ChuvochinaAustralian Centre for Ecogenomics, The University of QueenslandEmail confirmado em uq.edu.au
Christian RinkeProfessor, University of Innsbruck, Austria & Honorary Associate Professor, UQ, AustraliaEmail confirmado em uibk.ac.at
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryEmail confirmado em lbl.gov
Natalia IvanovaDOE Joint Genome InstituteEmail confirmado em lbl.gov
Pierre-Alain ChaumeilBioinformatician, University of QueenslandEmail confirmado em uq.edu.au
Todd DeSantisCo-founder & Vice President, Informatics, Second Genome, Inc.Email confirmado em secondgenome.com
Linda Louise BlackallProfessor of Environmental MicrobiologyEmail confirmado em unimelb.edu.au
David W WaiteSenior Scientist, Ministry for Primary IndustriesEmail confirmado em mpi.govt.nz
Susannah TringeEnvironmental Genomics and Systems Biology, Lawrence Berkeley National LaboratoryEmail confirmado em lbl.gov
Aaron J MussigThe University of QueenslandEmail confirmado em uq.edu.au
Gary AndersenLawrence Berkeley LaboratoryEmail confirmado em lbl.gov
Ben J WoodcroftMicrobial informatics group leader, Centre for Microbiome Research, QUTEmail confirmado em qut.edu.au
Tanja WoykeDOE Joint Genome InstituteEmail confirmado em lbl.gov
Mark MorrisonUniversity of QueenslandEmail confirmado em uq.edu.au
Michael ImelfortnoneEmail confirmado em uts.edu.au
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDEmail confirmado em ucsd.edu
Eoin BrodieDeputy Division Director, Climate and Ecosystem Sciences, Lawrence Berkeley National LabEmail confirmado em lbl.gov
Rochelle M. SooUniversity of QueenslandEmail confirmado em uq.edu.au

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Philip Hugenholtz

Australian Centre for Ecogenomics, SCMB, The University of Queensland

Email confirmado em uq.edu.au - Página inicial

microbial ecology and evolution


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ... Applied and Environmental Microbiology 72 (7), 5069-5072, 2006	12105	2006
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome Research 25 (7), 1043-1055, 2015	9624	2015
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME Journal 6 (3), 610-618, 2012	5489	2012
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks Bioinformatics 36 (6), 1925-1927, 2020	4009	2020
STAMP: statistical analysis of taxonomic and functional profiles DH Parks, GW Tyson, P Hugenholtz, RG Beiko Bioinformatics 30 (21), 3123-3124, 2014	3830	2014
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity P Hugenholtz, BM Goebel, NR Pace Journal of Bacteriology 180 (18), 4765-4774, 1998	3367	1998
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature Biotechnology 36 (10), 996-1004, 2018	3129	2018
Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	2928	2012
Community structure and metabolism through reconstruction of microbial genomes from the environment GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ... Nature 428 (6978), 37-43, 2004	2903	2004
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013	2510	2013
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	2063	2005
First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: a proof of concept for the wastewater surveillance of COVID-19 in the community W Ahmed, N Angel, J Edson, K Bibby, A Bivins, JW O'Brien, PM Choi, ... Science of the Total Environment 728, 138764, 2020	1937	2020
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature Biotechnology 35 (8), 725-731, 2017	1861	2017
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments T Huber, G Faulkner, P Hugenholtz Bioinformatics 20 (14), 2317-2319, 2004	1812	2004
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature Microbiology 2 (11), 1533-1542, 2017	1723	2017
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007	1561	2007
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates V Kunin, A Engelbrektson, H Ochman, P Hugenholtz Environmental Microbiology 12 (1), 118-123, 2010	1501	2010
Emerging pathogenic links between microbiota and the gut–lung axis KF Budden, SL Gellatly, DLA Wood, MA Cooper, M Morrison, ... Nature Reviews Microbiology 15 (1), 55-63, 2017	1426	2017
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ... Nature Biotechnology 31 (6), 533-538, 2013	1393	2013
The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature Biotechnology 26 (5), 541-547, 2008	1393	2008

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