Artigos com autorizações de acesso público - Mihaela PerteaSaiba mais
Disponíveis em algum local: 36
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg
Nature biotechnology 33 (3), 290-295, 2015
Autorizações: US National Institutes of Health
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg
Nature protocols 11 (9), 1650-1667, 2016
Autorizações: US National Science Foundation, US National Institutes of Health
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ...
Genome biology 9, 1-22, 2008
Autorizações: US National Institutes of Health
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome biology 20, 1-13, 2019
Autorizações: US National Science Foundation, US National Institutes of Health
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
Autorizações: US National Institutes of Health
GFF utilities: GffRead and GffCompare
G Pertea, M Pertea
F1000Research 9, 2020
Autorizações: US National Science Foundation, US National Institutes of Health
Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations
K Deng, M Pertea, A Rongvaux, L Wang, CM Durand, G Ghiaur, J Lai, ...
Nature 517 (7534), 381-385, 2015
Autorizações: Bill & Melinda Gates Foundation, US National Institutes of Health, Howard …
Between a chicken and a grape: estimating the number of human genes
M Pertea, SL Salzberg
Genome biology 11, 1-7, 2010
Autorizações: US National Institutes of Health
Defective HIV-1 proviruses are expressed and can be recognized by cytotoxic T lymphocytes, which shape the proviral landscape
RA Pollack, RB Jones, M Pertea, KM Bruner, AR Martin, AS Thomas, ...
Cell host & microbe 21 (4), 494-506. e4, 2017
Autorizações: Bill & Melinda Gates Foundation, US National Institutes of Health, Howard …
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
M Pertea, A Shumate, G Pertea, A Varabyou, FP Breitwieser, YC Chang, ...
Genome biology 19 (1), 1-14, 2018
Autorizações: US National Science Foundation, US National Institutes of Health
The human transcriptome: an unfinished story
M Pertea
Genes 3 (3), 344-360, 2012
Autorizações: US National Institutes of Health
Improved transcriptome assembly using a hybrid of long and short reads with StringTie
A Shumate, B Wong, G Pertea, M Pertea
PLoS computational biology 18 (6), e1009730, 2022
Autorizações: US National Science Foundation, US National Institutes of Health
Human contamination in bacterial genomes has created thousands of spurious proteins
FP Breitwieser, M Pertea, AV Zimin, SL Salzberg
Genome research 29 (6), 954-960, 2019
Autorizações: US National Science Foundation, US Department of Defense, US National …
OperonDB: a comprehensive database of predicted operons in microbial genomes
M Pertea, K Ayanbule, M Smedinghoff, SL Salzberg
Nucleic acids research 37 (suppl_1), D479-D482, 2009
Autorizações: US National Institutes of Health
Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms
TC Chang, M Pertea, S Lee, SL Salzberg, JT Mendell
Genome research 25 (9), 1401-1409, 2015
Autorizações: US National Institutes of Health
Single-cell transcriptional landscapes reveal HIV-1–driven aberrant host gene transcription as a potential therapeutic target
R Liu, YHJ Yeh, A Varabyou, JA Collora, S Sherrill-Mix, CC Talbot Jr, ...
Science translational medicine 12 (543), eaaz0802, 2020
Autorizações: US National Institutes of Health
nGASP–the nematode genome annotation assessment project
A Coghlan, T Fiedler, S McKay, P Flicek, T Harris, D Blasiar
BMC bioinformatics 9 (1), 549, 2008
Autorizações: US National Institutes of Health
The status of the human gene catalogue
P Amaral, S Carbonell-Sala, FM De La Vega, T Faial, A Frankish, ...
Nature 622 (7981), 41-47, 2023
Autorizações: US National Science Foundation, US National Institutes of Health, National …
Major data analysis errors invalidate cancer microbiome findings
A Gihawi, Y Ge, J Lu, D Puiu, A Xu, CS Cooper, DS Brewer, M Pertea, ...
MBio 14 (5), e01607-23, 2023
Autorizações: US National Institutes of Health, Cancer Research UK, Prostate Cancer UK
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ...
Nature methods, 1-15, 2024
Autorizações: National Health and Medical Research Council, Australia, Wellcome Trust …
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