Simon Roux

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Matthew B SullivanDistinguished Professor, Ohio State University / Founding Director, Center of Microbiome ScienceEmail confirmado em osu.edu
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteEmail confirmado em lbl.gov
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryEmail confirmado em lbl.gov
Benjamin BolducThe Ohio State UniversityEmail confirmado em osu.edu
Tanja WoykeDOE Joint Genome InstituteEmail confirmado em lbl.gov
François EnaultMaître de conférenceEmail confirmado em univ-bpclermont.fr
Stephen NayfachProfluent BioEmail confirmado em profluent.bio
Mart KrupovicHead of the Archaeal Virology Unit, Institut PasteurEmail confirmado em pasteur.fr
Frederik SchulzDOE Joint Genome InstituteEmail confirmado em lbl.gov
Kelly C. WrightonColorado State UniversityEmail confirmado em colostate.edu
Natalia IvanovaDOE Joint Genome InstituteEmail confirmado em lbl.gov
TBK ReddyLawrence Berkeley National LaboratoryEmail confirmado em lbl.gov
Gareth (Gary) TrublStaff Scientist at Lawrence Livermore National LaboratoryEmail confirmado em llnl.gov
Neha J VargheseDOE Joint Genome InstituteEmail confirmado em lbl.gov
Didier DEBROASUCAEmail confirmado em uca.fr
Virginia I. RichAssociate Professor of Microbial Ecology, Ohio State UniversityEmail confirmado em osu.edu
Natalie SolonenkoOhio State UniversityEmail confirmado em osu.edu
Rebecca A. DalyScience Strategy & Operations Lead, Soil Health, SyngentaEmail confirmado em syngenta.com
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Bioinformatics, Utrecht UniversityEmail confirmado em uni-jena.de
Joanne B. EmersonAssociate Professor, University of California, DavisEmail confirmado em ucdavis.edu

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Simon Roux

DOE Joint Genome Institute

Email confirmado em lbl.gov - Página inicial

viral diversity virus evolution viruses of microbes metagenomics bioinformatics


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ... Microbiome 5, 1-16, 2017	1415	2017
CheckV assesses the quality and completeness of metagenome-assembled viral genomes S Nayfach, AP Camargo, F Schulz, E Eloe-Fadrosh, S Roux, NC Kyrpides Nature biotechnology 39 (5), 578-585, 2021	1135	2021
VirSorter: mining viral signal from microbial genomic data S Roux, F Enault, BL Hurwitz, MB Sullivan PeerJ 3, e985, 2015	1117*	2015
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	944	2015
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021	836	2021
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ... Nature, 2016	812	2016
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	795	2016
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ... Nature biotechnology 37 (6), 632-639, 2019	782	2019
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	744	2019
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	738	2015
DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic acids research 48 (16), 8883-8900, 2020	729	2020
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	728	2021
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	581	2019
Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018	500*	2018
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes S Roux, SJ Hallam, T Woyke, MB Sullivan elife 4, e08490, 2015	499	2015
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ... Nucleic acids research 49 (D1), D751-D763, 2021	436	2021
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit The ISME journal 11 (1), 237-247, 2017	397	2017
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019	353	2019
Identification of mobile genetic elements with geNomad AP Camargo, S Roux, F Schulz, M Babinski, Y Xu, B Hu, PSG Chain, ... Nature Biotechnology 42 (8), 1303-1312, 2024	341	2024
Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments SA Eichorst, D Trojan, S Roux, C Herbold, T Rattei, D Woebken Environmental Microbiology 20 (3), 1041-1063, 2018	309	2018

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