David Dulin

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Jan LipfertDepartment of Physics, Utrecht University, The NetherlandsEmail confirmado em lmu.de
Antoine Le GallChargé de recherche, CNRS, Centre de Biochimie Structurale, MontpellierEmail confirmado em cbs.cnrs.fr
Bojk A. BerghuisPostdoctoral Scholar, Stanford UniversityEmail confirmado em stanford.edu
Martin DepkenBionanoscience Dep., TU DelftEmail confirmado em tudelft.nl
Jelmer CnossenReplay BioEmail confirmado em replay.bio
BOUYER PhilippeQuantum Delta NL, Univ. van Amsterdam, Technical University Eindhoven, Institut d'OptiqueEmail confirmado em institutoptique.fr
olivier NamyCNRSEmail confirmado em igmors.u-psud.fr
Richard JanissenKavli Institute of Nanoscience DelftEmail confirmado em bionanotech.eu
Francesco PedaciCBS CNRS, Montpellier - FranceEmail confirmado em cbs.cnrs.fr
Achillefs KapanidisProfessor in Biological Physics, University of OxfordEmail confirmado em physics.ox.ac.uk
Jacob J. W. BakermansUniversity of OxfordEmail confirmado em dtc.ox.ac.uk
Nicholas DixonProfessor of Chemistry, University of WollongongEmail confirmado em uow.edu.au
Rhiju DasHHMI & Stanford UniversityEmail confirmado em stanford.edu
Fang-Chieh ChouSoftware Engineer, DoorDash LabsEmail confirmado em alumni.stanford.edu
Daniel A. HarkiNorthrop Professor, Department of Medicinal Chemistry, University of MinnesotaEmail confirmado em umn.edu
Anne S. MeyerUniversity of RochesterEmail confirmado em rochester.edu
Natalia VtyurinaGroningen Research Institute of PharmacyEmail confirmado em rug.nl
Elio AbbondanzieriResearch Assistant Professor, University of RochesterEmail confirmado em rochester.edu
stephane barlandInstitut Non Lineaire de Nice - Université de NiceEmail confirmado em inln.cnrs.fr
Gilles ClavierDirecteur de Recherche CNRS, Laboratroire PPSM, ENS CachanEmail confirmado em ens-paris-saclay.fr

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David Dulin

VU Amsterdam – Physics of Living Systems

Email confirmado em vu.nl - Página inicial

single-molecule biophysics magnetic tweezers FRET transcription RNA virus


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Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA J Lipfert, GM Skinner, JM Keegstra, T Hensgens, T Jager, D Dulin, ... Proceedings of the National Academy of Sciences 111 (43), 15408-15413, 2014	207	2014
An optimized software framework for real-time, high-throughput tracking of spherical beads JP Cnossen, D Dulin, NH Dekker Review of Scientific Instruments 85 (10), 2014	129	2014
High spatiotemporal-resolution magnetic tweezers: calibration and applications for DNA dynamics D Dulin, TJ Cui, J Cnossen, MW Docter, J Lipfert, NH Dekker Biophysical journal 109 (10), 2113-2125, 2015	117	2015
Studying genomic processes at the single-molecule level: introducing the tools and applications D Dulin, J Lipfert, MC Moolman, NH Dekker Nature Reviews Genetics 14 (1), 9-22, 2013	116	2013
A force calibration standard for magnetic tweezers Z Yu, D Dulin, J Cnossen, M Köber, MM van Oene, O Ordu, BA Berghuis, ... Review of Scientific Instruments 85 (12), 2014	98	2014
Biological magnetometry: torque on superparamagnetic beads in magnetic fields MM Van Oene, LE Dickinson, F Pedaci, M Köber, D Dulin, J Lipfert, ... Physical review letters 114 (21), 218301, 2015	95	2015
Inhibition of SARS-CoV-2 polymerase by nucleotide analogs from a single-molecule perspective M Seifert, SC Bera, P van Nies, RN Kirchdoerfer, A Shannon, TTN Le, ... eLife 10, e70968, 2021	86*	2021
Elongation-competent pauses govern the fidelity of a viral RNA-dependent RNA polymerase D Dulin, ID Vilfan, BA Berghuis, S Hage, DH Bamford, MM Poranen, ... Cell reports 10 (6), 983-992, 2015	82	2015
Signatures of nucleotide analog incorporation by an RNA-dependent RNA polymerase revealed using high-throughput magnetic tweezers D Dulin, JJ Arnold, T van Laar, HS Oh, C Lee, AL Perkins, DA Harki, ... Cell reports 21 (4), 1063-1076, 2017	72	2017
Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers F Kriegel, N Ermann, R Forbes, D Dulin, NH Dekker, J Lipfert Nucleic acids research 45 (10), 5920-5929, 2017	72	2017
Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments R Janissen, BA Berghuis, D Dulin, M Wink, T van Laar, NH Dekker Nucleic acids research 42 (18), e137-e137, 2014	69	2014
Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria D Dulin, DLV Bauer, AM Malinen, JJW Bakermans, M Kaller, Z Morichaud, ... Nature communications 9 (1), 1478, 2018	62	2018
Strand separation establishes a sustained lock at the Tus–Ter replication fork barrier BA Berghuis, D Dulin, ZQ Xu, T Van Laar, B Cross, R Janissen, S Jergic, ... Nature chemical biology 11 (8), 579-585, 2015	53	2015
Correction-free force calibration for magnetic tweezers experiments E Ostrofet, FS Papini, D Dulin Scientific reports 8 (1), 15920, 2018	51	2018
Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments D Dulin, BA Berghuis, M Depken, NH Dekker Current opinion in structural biology 34, 116-122, 2015	45	2015
Hysteresis in DNA compaction by Dps is described by an Ising model NN Vtyurina, D Dulin, MW Docter, AS Meyer, NH Dekker, ... Proceedings of the National Academy of Sciences 113 (18), 4982-4987, 2016	42	2016
Efficient illumination for microsecond tracking microscopy D Dulin, S Barland, X Hachair, F Pedaci PloS one 9 (9), e107335, 2014	42	2014
Simultaneous calibration of optical tweezers spring constant and position detector response A Le Gall, K Perronet, D Dulin, A Villing, P Bouyer, K Visscher, ... Optics Express 18 (25), 26469-26474, 2010	39	2010
Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site D Dulin, ID Vilfan, BA Berghuis, MM Poranen, M Depken, NH Dekker Nucleic acids research 43 (21), 10421-10429, 2015	36	2015
The nucleotide addition cycle of the SARS-CoV-2 polymerase SC Bera, M Seifert, RN Kirchdoerfer, P van Nies, Y Wubulikasimu, ... Cell Reports 36 (9), 109650, 2021	30	2021

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