| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2544 | 2017 |
| Contamination in low microbial biomass microbiome studies: issues and recommendations R Eisenhofer, JJ Minich, C Marotz, A Cooper, R Knight, LS Weyrich Trends in microbiology 27 (2), 105-117, 2019 | 873 | 2019 |
| Microbiome 101: studying, analyzing, and interpreting gut microbiome data for clinicians C Allaband, D McDonald, Y Vázquez-Baeza, JJ Minich, A Tripathi, ... Clinical gastroenterology and hepatology 17 (2), 218-230, 2019 | 335 | 2019 |
| Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces A Checinska Sielaff, C Urbaniak, GBM Mohan, VG Stepanov, Q Tran, ... Microbiome 7, 1-21, 2019 | 216 | 2019 |
| Quantifying and understanding well-to-well contamination in microbiome research JJ Minich, JG Sanders, A Amir, G Humphrey, JA Gilbert, R Knight MSystems 4 (4), 10.1128/msystems. 00186-19, 2019 | 144* | 2019 |
| Visualizing’omic feature rankings and log-ratios using Qurro MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ... NAR genomics and bioinformatics 2 (2), lqaa023, 2020 | 137 | 2020 |
| KatharoSeq enables high-throughput microbiome analysis from low-biomass samples JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ... MSystems 3 (3), 10.1128/msystems. 00218-17, 2018 | 128* | 2018 |
| Home chemical and microbial transitions across urbanization LI McCall, C Callewaert, Q Zhu, SJ Song, A Bouslimani, JJ Minich, ... Nature microbiology 5 (1), 108-115, 2020 | 125 | 2020 |
| Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption JJ Minich, MM Morris, M Brown, M Doane, MS Edwards, TP Michael, ... PLoS One 13 (2), e0192772, 2018 | 122 | 2018 |
| Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature microbiology 7 (12), 2128-2150, 2022 | 116 | 2022 |
| Microbial ecology of Atlantic salmon (Salmo salar) hatcheries: impacts of the built environment on fish mucosal microbiota JJ Minich, GD Poore, K Jantawongsri, C Johnston, K Bowie, J Bowman, ... Applied and environmental microbiology 86 (12), e00411-20, 2020 | 107 | 2020 |
| Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus JJ Minich, S Petrus, JD Michael, TP Michael, R Knight, EE Allen Msphere 5 (3), 10.1128/msphere. 00401-20, 2020 | 91 | 2020 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20, 1-14, 2019 | 64 | 2019 |
| High-throughput miniaturized 16S rRNA amplicon library preparation reduces costs while preserving microbiome integrity JJ Minich, G Humphrey, RAS Benitez, J Sanders, A Swafford, EE Allen, ... Msystems 3 (6), 10.1128/msystems. 00166-18, 2018 | 61* | 2018 |
| Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater D Petras, JJ Minich, LB Cancelada, RR Torres, E Kunselman, M Wang, ... Chemosphere 271, 129450, 2021 | 56 | 2021 |
| Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species JJ Minich, A Härer, J Vechinski, BW Frable, ZR Skelton, E Kunselman, ... Nature communications 13 (1), 6978, 2022 | 54 | 2022 |
| From sample to multi-omics conclusions in under 48 hours RA Quinn, JA Navas-Molina, ER Hyde, SJ Song, Y Vázquez-Baeza, ... Msystems 1 (2), e00038-16, 2016 | 54* | 2016 |
| Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces. Microbiome 7: 50 A Checinska Sielaff, C Urbaniak, GBM Mohan, VG Stepanov, Q Tran, ... Bioinformatics 30, 2114-2120, 2019 | 53 | 2019 |
| Improved multiple displacement amplification (iMDA) and ultraclean reagents ST Motley, JM Picuri, CD Crowder, JJ Minich, SA Hofstadler, MW Eshoo BMC genomics 15, 1-10, 2014 | 52 | 2014 |
| A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities JP Shaffer, CS Carpenter, C Martino, RA Salido, JJ Minich, MK Bryant, ... Biotechniques 73 (1), 34-46, 2022 | 50 | 2022 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDEmail confirmado em ucsd.edu