| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17597 | 2012 |
| The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019 | 6621 | 2019 |
| Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001 | 4975 | 2001 |
| The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences Y Perez-Riverol, J Bai, C Bandla, D García-Seisdedos, S Hewapathirana, ... Nucleic acids research 50 (D1), D543-D552, 2022 | 4689 | 2022 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 2588* | 2020 |
| SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ... Cell 181 (5), 1016-1035. e19, 2020 | 2505 | 2020 |
| BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ... Bioinformatics 21 (16), 3439-3440, 2005 | 2344 | 2005 |
| Transcriptome and genome sequencing uncovers functional variation in humans T Lappalainen, M Sammeth, MR Friedländer, PAC ‘t Hoen, J Monlong, ... Nature 501 (7468), 506-511, 2013 | 2128 | 2013 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1499 | 2011 |
| ArrayExpress—a public repository for microarray gene expression data at the EBI A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ... Nucleic acids research 31 (1), 68-71, 2003 | 1147 | 2003 |
| Gene expression data analysis A Brazma, J Vilo FEBS letters 480 (1), 17-24, 2000 | 950 | 2000 |
| Global transcriptional responses of fission yeast to environmental stress D Chen, WM Toone, J Mata, R Lyne, G Burns, K Kivinen, A Brazma, ... Molecular biology of the cell 14 (1), 214-229, 2003 | 941 | 2003 |
| ArrayExpress—a public database of microarray experiments and gene expression profiles H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, ... Nucleic acids research 35 (suppl_1), D747-D750, 2007 | 842 | 2007 |
| ArrayExpress update—simplifying data submissions N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ... Nucleic acids research 43 (D1), D1113-D1116, 2015 | 833 | 2015 |
| The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ... Nature biotechnology 22 (2), 177-183, 2004 | 770 | 2004 |
| Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ... Nucleic acids research 44 (D1), D746-D752, 2016 | 656 | 2016 |
| Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ... Nature biotechnology 26 (8), 889-896, 2008 | 625 | 2008 |
| Periodic gene expression program of the fission yeast cell cycle G Rustici, J Mata, K Kivinen, P Lió, CJ Penkett, G Burns, J Hayles, ... Nature genetics 36 (8), 809-817, 2004 | 608 | 2004 |
| Modeling sample variables with an Experimental Factor Ontology J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ... Bioinformatics 26 (8), 1112-1118, 2010 | 605 | 2010 |
| Design and implementation of microarray gene expression markup language (MAGE-ML) PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ... Genome biology 3, 1-9, 2002 | 604 | 2002 |