| Proteogenomic landscape of squamous cell lung cancer PA Stewart, EA Welsh, RJC Slebos, B Fang, V Izumi, M Chambers, ... Nature communications 10 (1), 3578, 2019 | 118 | 2019 |
| The harsh microenvironment in early breast cancer selects for a Warburg phenotype M Damaghi, J West, M Robertson-Tessi, L Xu, MC Ferrall-Fairbanks, ... Proceedings of the National Academy of Sciences 118 (3), e2011342118, 2021 | 114 | 2021 |
| Differentially Expressed Transcripts and Dysregulated Signaling Pathways and Networks in African American Breast Cancer PA Stewart, J Luks, MD Roycik, QXA Sang, J Zhang PLOS ONE 8 (12), e82460, 2013 | 105 | 2013 |
| Polypharmacology-based ceritinib repurposing using integrated functional proteomics BM Kuenzi, LL Remsing Rix, PA Stewart, B Fang, F Kinose, AT Bryant, ... Nature chemical biology 13 (12), 1222-1231, 2017 | 82 | 2017 |
| An improved sharp interface method for viscoelastic and viscous two-phase flows PA Stewart, N Lay, M Sussman, M Ohta Journal of Scientific Computing 35, 43-61, 2008 | 66 | 2008 |
| Ten quick tips for deep learning in biology BD Lee, A Gitter, CS Greene, S Raschka, F Maguire, AJ Titus, MD Kessler, ... PLoS computational biology 18 (3), e1009803, 2022 | 40 | 2022 |
| Upregulation of minichromosome maintenance complex component 3 during epithelial-to-mesenchymal transition in human prostate cancer PA Stewart, ZI Khamis, HE Zhau, P Duan, Q Li, LWK Chung, QXA Sang Oncotarget 8 (24), 39209, 2017 | 38 | 2017 |
| A pilot proteogenomic study with data integration identifies MCT1 and GLUT1 as prognostic markers in lung adenocarcinoma PA Stewart, K Parapatics, EA Welsh, AC Müller, H Cao, B Fang, ... PLoS One 10 (11), e0142162, 2015 | 38 | 2015 |
| Betaglycan drives the mesenchymal stromal cell osteogenic program and prostate cancer-induced osteogenesis LM Cook, JS Frieling, N Nerlakanti, JJ McGuire, PA Stewart, KL Burger, ... Oncogene 38 (44), 6959-6969, 2019 | 30 | 2019 |
| Multimodal data integration for oncology in the era of deep neural networks: a review A Waqas, A Tripathi, RP Ramachandran, PA Stewart, G Rasool Frontiers in Artificial Intelligence 7, 1408843, 2024 | 28 | 2024 |
| Relative protein quantification and accessible biology in lung tumor proteomes from four LC‐MS/MS discovery platforms PA Stewart, B Fang, RJC Slebos, G Zhang, AL Borne, K Fellows, JK Teer, ... Proteomics 17 (6), 1600300, 2017 | 22 | 2017 |
| APOSTL: an interactive galaxy pipeline for reproducible analysis of affinity proteomics data BM Kuenzi, AL Borne, J Li, EB Haura, SA Eschrich, JM Koomen, U Rix, ... Journal of proteome research 15 (12), 4747-4754, 2016 | 22 | 2016 |
| Proteogenomic, epigenetic, and clinical implications of recurrent aberrant splice variants in clear cell renal cell carcinoma A Chang, NH Chakiryan, D Du, PA Stewart, Y Zhang, Y Tian, AC Soupir, ... European urology 82 (4), 354-362, 2022 | 17 | 2022 |
| Differential phosphopeptide expression in a benign breast tissue, and triple-negative primary and metastatic breast cancer tissues from the same African-American woman by LC … SM Semaan, X Wang, PA Stewart, AG Marshall, QXA Sang Biochemical and biophysical research communications 412 (1), 127-131, 2011 | 17 | 2011 |
| RBFOX2 deregulation promotes pancreatic cancer progression and metastasis through alternative splicing M Maurin, M Ranjouri, C Megino-Luque, JY Newberg, D Du, K Martin, ... Nature communications 14 (1), 8444, 2023 | 16 | 2023 |
| Characterization of the phosphoproteome in androgen-repressed human prostate cancer cells by Fourier transform ion cyclotron resonance mass spectrometry X Wang, PA Stewart, Q Cao, QXA Sang, LWK Chung, MR Emmett, ... Journal of proteome research 10 (9), 3920-3928, 2011 | 16 | 2011 |
| Integrated proteomics-based physical and functional mapping of AXL kinase signaling pathways and inhibitors define its role in cell migration A Majumder, S Hosseinian, M Stroud, E Adhikari, JJ Saller, MA Smith, ... Molecular Cancer Research 20 (4), 542-555, 2022 | 11 | 2022 |
| Activity-based proteomics reveals heterogeneous kinome and ATP-binding proteome responses to MEK inhibition in KRAS mutant lung cancer JY Kim, PA Stewart, AL Borne, B Fang, EA Welsh, YA Chen, SA Eschrich, ... Proteomes 4 (2), 16, 2016 | 11 | 2016 |
| Escape Excel: A tool for preventing gene symbol and accession conversion errors EA Welsh, PA Stewart, BM Kuenzi, JA Eschrich PLoS One 12 (9), e0185207, 2017 | 9 | 2017 |
| A comparative proteomics analysis identified differentially expressed proteins in pancreatic cancer–associated stellate cell small extracellular vesicles B Sarcar, B Fang, V Izumi, YON Lopez, A Tassielli, R Pratley, D Jeong, ... Molecular & Cellular Proteomics 21 (12), 2022 | 8 | 2022 |
John KoomenSenior Member, Moffitt Cancer CenterE-mail confirmado em moffitt.org
