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| Recapitulation of premature ageing with iPSCs from Hutchinson–Gilford progeria syndrome GH Liu, BZ Barkho, S Ruiz, D Diep, J Qu, SL Yang, AD Panopoulos, ... Nature 472 (7342), 221-225, 2011 | 640 | 2011 |
| The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming AD Panopoulos, O Yanes, S Ruiz, YS Kida, D Diep, R Tautenhahn, ... Cell research 22 (1), 168-177, 2012 | 591 | 2012 |
| Genome-wide analysis reveals TET-and TDG-dependent 5-methylcytosine oxidation dynamics L Shen, H Wu, D Diep, S Yamaguchi, AC D’Alessio, HL Fung, K Zhang, ... Cell 153 (3), 692-706, 2013 | 585 | 2013 |
| Comparative cellular analysis of motor cortex in human, marmoset and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... Nature 598 (7879), 111-119, 2021 | 495 | 2021 |
| Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA S Guo, D Diep, N Plongthongkum, HL Fung, K Zhang, K Zhang Nature genetics 49 (4), 635-642, 2017 | 484 | 2017 |
| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 441 | 2020 |
| Tet1 controls meiosis by regulating meiotic gene expression S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang Nature 492 (7429), 443-447, 2012 | 362 | 2012 |
| A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 326 | 2021 |
| An atlas of healthy and injured cell states and niches in the human kidney BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira, K Kalhor, ... Nature 619 (7970), 585-594, 2023 | 302 | 2023 |
| Advances in the profiling of DNA modifications: cytosine methylation and beyond N Plongthongkum, DH Diep, K Zhang Nature Reviews Genetics 15 (10), 647-661, 2014 | 300 | 2014 |
| Quantitative comparison of DNA methylation assays for biomarker development and clinical applications Nature biotechnology 34 (7), 726-737, 2016 | 251 | 2016 |
| Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells S Ruiz, D Diep, A Gore, AD Panopoulos, N Montserrat, N Plongthongkum, ... Proceedings of the National Academy of Sciences 109 (40), 16196-16201, 2012 | 197 | 2012 |
| Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage I Thiele, RMT Fleming, R Que, A Bordbar, D Diep, BO Palsson Public Library of Science 7 (9), e45635, 2012 | 133 | 2012 |
| Library-free methylation sequencing with bisulfite padlock probes D Diep, N Plongthongkum, A Gore, HL Fung, R Shoemaker, K Zhang Nature methods 9 (3), 270-272, 2012 | 125 | 2012 |
| Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... BioRxiv, 2020.03. 31.016972, 2020 | 74 | 2020 |
| DNA methylation identifies genetically and prognostically distinct subtypes of myelodysplastic syndromes B Reilly, TN Tanaka, D Diep, H Yeerna, P Tamayo, K Zhang, R Bejar Blood advances 3 (19), 2845-2858, 2019 | 43 | 2019 |
| Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2) N Plongthongkum, D Diep, S Chen, BB Lake, K Zhang Nature Protocols 16 (11), 4992-5029, 2021 | 32 | 2021 |
| A perceptual scaling approach to eyewitness identification S Gepshtein, Y Wang, F He, D Diep, TD Albright Nature communications 11 (1), 3380, 2020 | 28 | 2020 |
| A multimodal cell census and atlas of the mammalian primary motor cortex BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ... Biorxiv, 2020.10. 19.343129, 2020 | 22 | 2020 |
