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Dmitry Ivankov
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Local fitness landscape of the green fluorescent protein
KS Sarkisyan, DA Bolotin, MV Meer, DR Usmanova, AS Mishin, ...
Nature 533 (7603), 397-401, 2016
6232016
Contact order revisited: influence of protein size on the folding rate
DN Ivankov, SO Garbuzynskiy, E Alm, KW Plaxco, D Baker, AV Finkelstein
Protein science 12 (9), 2057-2062, 2003
4502003
Prediction of protein folding rates from the amino acid sequence-predicted secondary structure
DN Ivankov, AV Finkelstein
Proceedings of the National Academy of Sciences 101 (24), 8942-8944, 2004
2512004
Using AlphaFold to predict the impact of single mutations on protein stability and function
MA Pak, KA Markhieva, MS Novikova, DS Petrov, IS Vorobyev, ...
Plos one 18 (3), e0282689, 2023
1952023
Chain length is the main determinant of the folding rate for proteins with three‐state folding kinetics
OV Galzitskaya, SO Garbuzynskiy, DN Ivankov, AV Finkelstein
Proteins: Structure, Function, and Bioinformatics 51 (2), 162-166, 2003
1842003
Folding nuclei in proteins
OV Galzitskaya, DN Ivankov, AV Finkelstein
Molecular Biology 35, 605-613, 2001
1052001
An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
VO Pokusaeva, DR Usmanova, EV Putintseva, L Espinar, KS Sarkisyan, ...
PLoS genetics 15 (4), e1008079, 2019
1022019
Coupling between properties of the protein shape and the rate of protein folding
DN Ivankov, NS Bogatyreva, MY Lobanov, OV Galzitskaya
PloS one 4 (8), e6476, 2009
892009
Golden triangle for folding rates of globular proteins
SO Garbuzynskiy, DN Ivankov, NS Bogatyreva, AV Finkelstein
Proceedings of the National Academy of Sciences 110 (1), 147-150, 2013
862013
Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation
DR Usmanova, NS Bogatyreva, J Ariño Bernad, AA Eremina, ...
Bioinformatics 34 (21), 3653-3658, 2018
782018
KineticDB: a database of protein folding kinetics
NS Bogatyreva, AA Osypov, DN Ivankov
Nucleic acids research 37 (suppl_1), D342-D346, 2009
732009
There and back again: Two views on the protein folding puzzle
AV Finkelstein, AJ Badretdin, OV Galzitskaya, DN Ivankov, NS Bogatyreva, ...
Physics of life reviews 21, 56-71, 2017
562017
A structural perspective of compensatory evolution
DN Ivankov, AV Finkelstein, FA Kondrashov
Current opinion in structural biology 26, 104-112, 2014
492014
More compact protein globules exhibit slower folding rates
OV Galzitskaya, DC Reifsnyder, NS Bogatyreva, DN Ivankov, ...
Proteins: Structure, Function, and Bioinformatics 70 (2), 329-332, 2008
462008
How many signal peptides are there in bacteria?
DN Ivankov, SH Payne, MY Galperin, S Bonissone, PA Pevzner, ...
Environmental microbiology 15 (4), 983-990, 2013
452013
Theoretical Study of a Landscape of Protein Folding− Unfolding Pathways. Folding Rates at Midtransition
DN Ivankov, AV Finkelstein
Biochemistry 40 (33), 9957-9961, 2001
412001
Unexpected diversity of signal peptides in prokaryotes
SH Payne, S Bonissone, S Wu, RN Brown, DN Ivankov, D Frishman, ...
MBio 3 (6), 10.1128/mbio. 00339-12, 2012
402012
Solution of Levinthal’s paradox and a physical theory of protein folding times
DN Ivankov, AV Finkelstein
Biomolecules 10 (2), 250, 2020
342020
Compactness determines protein folding type
OV Galzitskaya, NS Bogatyreva, DN Ivankov
Journal of Bioinformatics and Computational Biology 6 (04), 667-680, 2008
312008
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis
DN Ivankov, NS Bogatyreva, P Hönigschmid, B Dislich, S Hogl, PH Kuhn, ...
Nucleic acids research 41 (W1), W459-W464, 2013
302013
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