| An integrated semiconductor device enabling non-optical genome sequencing JM Rothberg, W Hinz, TM Rearick, J Schultz, W Mileski, M Davey, ... Nature 475 (7356), 348-352, 2011 | 3006 | 2011 |
| Convolutional neural network architectures for predicting DNA–protein binding H Zeng, MD Edwards, G Liu, DK Gifford Bioinformatics 32 (12), i121-i127, 2016 | 552 | 2016 |
| High-throughput mapping of regulatory DNA N Rajagopal, S Srinivasan, K Kooshesh, Y Guo, MD Edwards, B Banerjee, ... Nature biotechnology 34 (2), 167-174, 2016 | 275 | 2016 |
| Determination of RNA structural diversity and its role in HIV-1 RNA splicing PJ Tomezsko, VDA Corbin, P Gupta, H Swaminathan, M Glasgow, ... Nature 582 (7812), 438-442, 2020 | 190 | 2020 |
| An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding S Mahony, MD Edwards, EO Mazzoni, RI Sherwood, A Kakumanu, ... PLoS computational biology 10 (3), e1003501, 2014 | 85 | 2014 |
| High-resolution genetic mapping with pooled sequencing MD Edwards, DK Gifford BMC bioinformatics 13, 1-11, 2012 | 83 | 2012 |
| Predicting gene expression in massively parallel reporter assays: A comparative study A Kreimer, H Zeng, MD Edwards, Y Guo, K Tian, S Shin, R Welch, ... Human mutation 38 (9), 1240-1250, 2017 | 54 | 2017 |
| Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges R Daneshjou, Y Wang, Y Bromberg, S Bovo, PL Martelli, G Babbi, ... Human mutation 38 (9), 1182-1192, 2017 | 49 | 2017 |
| Interactions between chromosomal and nonchromosomal elements reveal missing heritability MD Edwards, A Symbor-Nagrabska, L Dollard, DK Gifford, GR Fink Proceedings of the National Academy of Sciences 111 (21), 7719-7722, 2014 | 41 | 2014 |
| Toward a mobile platform for real-world digital measurement of depression: user-centered design, data quality, and behavioral and clinical modeling S Nickels, MD Edwards, SF Poole, D Winter, J Gronsbell, B Rozenkrants, ... JMIR mental health 8 (8), e27589, 2021 | 37 | 2021 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 27 | 2020 |
| Universal count correction for high-throughput sequencing TB Hashimoto, MD Edwards, DK Gifford PLoS computational biology 10 (3), e1003494, 2014 | 21 | 2014 |
| A holistic approach for suppression of COVID-19 spread in workplaces and universities SF Poole, J Gronsbell, D Winter, S Nickels, R Levy, B Fu, M Burq, S Saeb, ... PloS one 16 (8), e0254798, 2021 | 20 | 2021 |
| Accurate eQTL prioritization with an ensemble‐based framework H Zeng, MD Edwards, Y Guo, DK Gifford Human Mutation 38 (9), 1259-1265, 2017 | 16 | 2017 |
| Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 605 (7909), E3-E3, 2022 | 9 | 2022 |
| Boarding at the Speed of Flight M Bauer, K Bhawalkar, M Edwards UMAP Journal 237, 2007 | 7 | 2007 |
| Author Correction: Perspectives on ENCODE (Nature,(2020), 583, 7818,(693-698), 10.1038/s41586-020-2449-8) FBC Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, R Ai, ... Springer Nature, 2022 | | 2022 |
| Perspectives on ENCODE NJ Addleman, J Adrian, UK Baymuradov, A Bhaskar, N Boley, L Cao, ... Nature 583 (7818), 693-698, 2020 | | 2020 |
| Information-sharing models for computational genetics MD Edwards Massachusetts Institute of Technology, 2016 | | 2016 |
| Computational methods for high-throughput pooled genetic experiments MD Edwards Massachusetts Institute of Technology, 2011 | | 2011 |