Jaime Huerta-Cepas

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Peer BorkDirector of EMBL HeidelbergE-mail confirmado em embl.de
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsE-mail confirmado em imls.uzh.ch
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichE-mail confirmado em isb-sib.ch
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)E-mail confirmado em crg.es
Lars Juhl JensenUniversity of CopenhagenE-mail confirmado em cpr.ku.dk
Luis Pedro CoelhoCentre for Microbiome Research, Queensland University of TechnologyE-mail confirmado em qut.edu.au
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsE-mail confirmado em ethz.ch
Michael Kuhnresearch staff scientist & research coordinator in the lab of Peer Bork, EMBLE-mail confirmado em embl.de
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamE-mail confirmado em amsterdamumc.nl
Ivica Letunićbiobyte solutions GmbHE-mail confirmado em biobyte.de
Joaquin DopazoComputational Medicine Platform, FPS, Hospital Virgen del Rocio, Sevilla, SpainE-mail confirmado em juntadeandalucia.es
Falk HildebrandGroup Leader, Quadram & Earlham Institute, Norwich, UKE-mail confirmado em quadram.ac.uk
Carlos P CantalapiedraCentro de Biotecnología y Genómica de Plantas - UPM-INIAE-mail confirmado em inia.csic.es
Georg ZellerLUMC Leiden & EMBL HeidelbergE-mail confirmado em embl.de
françois serra3D Chromatin Organization - IJCE-mail confirmado em carrerasresearch.org
Marina Marcet-HoubenBarcelona Supercomputing Center - BSCE-mail confirmado em bsc.es
Paul Igor CosteaBASFE-mail confirmado em basf.com
Salvador Capella-GutiérrezBarcelona Supercomputing Centre (BSC)E-mail confirmado em bsc.es
Simone S LiGroup Leader & NHMRC Early Career Fellow, Monash University, AustraliaE-mail confirmado em monash.edu
Pablo MinguezResearcher & Head of Bioinformatics Unit - IIS Fundación Jiménez Díaz (Madrid, Spain)E-mail confirmado em quironsalud.es

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Jaime Huerta-Cepas

Group Leader at CBGP (UPM-INIA-CSIC), Madrid, Spain

E-mail confirmado em embl.de - Página inicial

Phylogenomics Phylogenetics Evolution Computational Biology Metagenomics


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STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019	15421	2019
STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015	10652	2015
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019	3271	2019
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017	2368	2017
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale CP Cantalapiedra, A Hernández-Plaza, I Letunic, P Bork, J Huerta-Cepas Molecular Biology and Evolution 38 (12), 2021	2187	2021
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	2016	2016
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1991	2014
ETE 3: reconstruction, analysis, and visualization of phylogenomic data J Huerta-Cepas, F Serra, P Bork Molecular biology and evolution 33 (6), 1635-1638, 2016	1907	2016
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018	1824	2018
Genome Sequence of the Pea Aphid Acyrthosiphon pisum International Aphid Genomics Consortium PLoS biology 8 (2), e1000313, 2010	1004	2010
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014	626	2014
Durable coexistence of donor and recipient strains after fecal microbiota transplantation SS Li, A Zhu, V Benes, PI Costea, R Hercog, F Hildebrand, ... Science 352 (6285), 586-589, 2016	571	2016
ETE: a python Environment for Tree Exploration J Huerta-Cepas, J Dopazo, T Gabaldón BMC bioinformatics 11, 1-7, 2010	450	2010
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019	420	2019
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019	328	2019
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, M Marcet-Houben, ... Nucleic acids research 42 (D1), D897-D902, 2014	255	2014
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ... Nucleic acids research 39 (suppl_2), W470-W474, 2011	252	2011
The human phylome J Huerta-Cepas, H Dopazo, J Dopazo, T Gabaldón Genome biology 8, 1-16, 2007	238	2007
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	232	2016
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ... Science 374 (6568), 717-723, 2021	188	2021

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