| Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation G Rocap, FW Larimer, J Lamerdin, S Malfatti, P Chain, NA Ahlgren, ... Nature 424 (6952), 1042-1047, 2003 | 1310 | 2003 |
| DAF-16 target genes that control C. elegans life-span and metabolism SS Lee, S Kennedy, AC Tolonen, G Ruvkun science 300 (5619), 644-647, 2003 | 808 | 2003 |
| Precise manipulation of chromosomes in vivo enables genome-wide codon replacement FJ Isaacs, PA Carr, HH Wang, MJ Lajoie, B Sterling, L Kraal, AC Tolonen, ... Science 333 (6040), 348-353, 2011 | 693 | 2011 |
| Transfer of photosynthesis genes to and from Prochlorococcus viruses D Lindell, MB Sullivan, ZI Johnson, AC Tolonen, F Rohwer, SW Chisholm Proceedings of the National Academy of Sciences 101 (30), 11013-11018, 2004 | 631 | 2004 |
| Human genetic variation and the gut microbiome in disease AB Hall, AC Tolonen, RJ Xavier Nature Reviews Genetics 18 (11), 690-699, 2017 | 569 | 2017 |
| Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium L Frangeul, P Quillardet, AM Castets, JF Humbert, HCP Matthijs, D Cortez, ... BMC genomics 9, 1-20, 2008 | 245 | 2008 |
| Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability AC Tolonen, J Aach, D Lindell, ZI Johnson, T Rector, R Steen, GM Church, ... Molecular systems biology 2 (1), 53, 2006 | 167 | 2006 |
| Proteome‐wide systems analysis of a cellulosic biofuel‐producing microbe AC Tolonen, W Haas, AC Chilaka, J Aach, SP Gygi, GM Church Molecular systems biology 7 (1), 461, 2011 | 132 | 2011 |
| Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass M Boutard, T Cerisy, PY Nogue, A Alberti, J Weissenbach, M Salanoubat, ... PLoS Genetics 10 (11), e1004773, 2014 | 129 | 2014 |
| Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut X Jiang, AB Hall, TD Arthur, DR Plichta, CT Covington, M Poyet, ... Science 363 (6423), 181-187, 2019 | 117 | 2019 |
| Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367 AC Tolonen, AC Chilaka, GM Church Molecular microbiology 74 (6), 1300-1313, 2009 | 113 | 2009 |
| Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease N Fornelos, EA Franzosa, J Bishai, JW Annand, A Oka, J Lloyd-Price, ... Nature microbiology 5 (3), 486-497, 2020 | 83 | 2020 |
| Genetic Manipulation of Prochlorococcus Strain MIT9313: Green Fluorescent Protein Expression from an RSF1010 Plasmid and Tn5 Transposition AC Tolonen, GB Liszt, WR Hess Applied and environmental microbiology 72 (12), 7607-7613, 2006 | 71 | 2006 |
| Quantitative proteomics using reductive dimethylation for stable isotope labeling AC Tolonen, W Haas Journal of visualized experiments: JoVE, 51416, 2014 | 55 | 2014 |
| Synthetic glycans control gut microbiome structure and mitigate colitis in mice AC Tolonen, N Beauchemin, C Bayne, L Li, J Tan, J Lee, BM Meehan, ... Nature Communications 13 (1), 1244, 2022 | 44 | 2022 |
| Dissecting the human microbiome with single-cell genomics AC Tolonen, RJ Xavier Genome medicine 9, 1-3, 2017 | 39 | 2017 |
| Fungal lysis by a soil bacterium fermenting cellulose AC Tolonen, T Cerisy, H El‐Sayyed, M Boutard, M Salanoubat, ... Environmental microbiology 17 (8), 2618-2627, 2015 | 32 | 2015 |
| Physiology, genomics, and pathway engineering of an ethanol-tolerant strain of Clostridium phytofermentans AC Tolonen, TR Zuroff, M Ramya, M Boutard, T Cerisy, WR Curtis Applied and environmental microbiology 81 (16), 5440-5448, 2015 | 29 | 2015 |
| Evolution of a biomass-fermenting bacterium to resist lignin phenolics T Cerisy, T Souterre, I Torres-Romero, M Boutard, I Dubois, J Patrouix, ... Applied and Environmental Microbiology 83 (11), e00289-17, 2017 | 27 | 2017 |
| Global repositioning of transcription start sites in a plant-fermenting bacterium M Boutard, L Ettwiller, T Cerisy, A Alberti, K Labadie, M Salanoubat, ... Nature communications 7 (1), 13783, 2016 | 26 | 2016 |