| STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019 | 15421 | 2019 |
| STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015 | 10652 | 2015 |
| The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ... Nucleic acids research, gkw937, 2016 | 7116 | 2016 |
| The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ... Nucleic acids research 49 (D1), D605-D612, 2021 | 6274 | 2021 |
| STRING v9. 1: protein-protein interaction networks, with increased coverage and integration A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ... Nucleic acids research 41 (D1), D808-D815, 2012 | 4908 | 2012 |
| The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ... Nucleic acids research 39 (suppl_1), D561-D568, 2010 | 3920 | 2010 |
| eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019 | 3271 | 2019 |
| The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ... Nucleic acids research 51 (D1), D638-D646, 2023 | 2600 | 2023 |
| Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017 | 2368 | 2017 |
| eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016 | 2016 | 2016 |
| STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data D Szklarczyk, A Santos, C Von Mering, LJ Jensen, P Bork, M Kuhn Nucleic acids research 44 (D1), D380-D384, 2016 | 1407 | 2016 |
| Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ... Nature 499 (7456), 74-78, 2013 | 1018 | 2013 |
| eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014 | 626 | 2014 |
| eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ... Nucleic acids research 40 (D1), D284-D289, 2012 | 626 | 2012 |
| Version 4.0 of PaxDb: protein abundance data, integrated across model organisms, tissues, and cell‐lines M Wang, CJ Herrmann, M Simonovic, D Szklarczyk, C von Mering Proteomics 15 (18), 3163-3168, 2015 | 618 | 2015 |
| STITCH 4: integration of protein–chemical interactions with user data M Kuhn, D Szklarczyk, S Pletscher-Frankild, TH Blicher, C Von Mering, ... Nucleic acids research 42 (D1), D401-D407, 2014 | 531 | 2014 |
| Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level JMR Danielsen, KB Sylvestersen, S Bekker-Jensen, D Szklarczyk, ... Molecular & Cellular Proteomics 10 (3), 2011 | 370 | 2011 |
| STITCH 3: zooming in on protein–chemical interactions M Kuhn, D Szklarczyk, A Franceschini, C Von Mering, LJ Jensen, P Bork Nucleic acids research 40 (D1), D876-D880, 2012 | 347 | 2012 |
| STITCH 2: an interaction network database for small molecules and proteins M Kuhn, D Szklarczyk, A Franceschini, M Campillos, C von Mering, ... Nucleic acids research 38 (suppl_1), D552-D556, 2010 | 303 | 2010 |
| eggNOG v2. 0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations J Muller, D Szklarczyk, P Julien, I Letunic, A Roth, M Kuhn, S Powell, ... Nucleic acids research 38 (suppl_1), D190-D195, 2010 | 294 | 2010 |
