Sergey Koren

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Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIHE-mail confirmado em nih.gov
Arang RhieStaff Scientist, NHGRI, NIHE-mail confirmado em nih.gov
Brian WalenzNHGRI, NIHE-mail confirmado em nih.gov
Todd J. TreangenAssociate Professor, Department of Computer Science, Rice UniversityE-mail confirmado em rice.edu
Nicholas BergmanDirector, National Biodefense Analysis and Countermeasures CenterE-mail confirmado em st.dhs.gov
Mihai PopProfessor of Computer Science, University of Maryland, College ParkE-mail confirmado em umd.edu
Timothy P. SmithUSDA/ARS U.S. Meat Animal Research CenterE-mail confirmado em ars.usda.gov
Jason Rafe MillerAssociate Professor of Computer Science, Hood CollegeE-mail confirmado em hood.edu
Brian OndovYale School of MedicineE-mail confirmado em yale.edu
Jay GhuryeGoogleE-mail confirmado em google.com
Derek BickhartResearch Geneticist, USDA ARSE-mail confirmado em ars.usda.gov
Evan EichlerProfessor of Genome Sciences, University of WashingtonE-mail confirmado em gs.washington.edu
Granger G. Sutton IIIProfessor of Informatics, J. Craig Venter InstituteE-mail confirmado em jcvi.org
Konstantin BerlinCiscoE-mail confirmado em cisco.com
Alexander T DiltheyInstitute of Medical Microbiology, University Hospital of DusseldorfE-mail confirmado em med.uni-duesseldorf.de
Glennis LogsdonUniversity of PennsylvaniaE-mail confirmado em pennmedicine.upenn.edu
John L. WilliamsUniversity of Adelaide / Università Cattolica del Sacro CuoreE-mail confirmado em adelaide.edu.au
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityE-mail confirmado em cs.jhu.edu
Sergey NurkPrincipal Bioinformatician, Oxford Nanopore TechnologiesE-mail confirmado em nanoporetech.com
Erich JarvisRockefeller University, Duke University, HHMIE-mail confirmado em rockefeller.edu

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Sergey Koren

Associate Investigator, NHGRI/NIH

E-mail confirmado em nih.gov - Página inicial

Bioinformatics High-performance computing Genome Assembly Computational Biology Computer Science


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	11051	2012
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017	6732	2017
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016	2867	2016
The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022	2639	2022
Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021	2263	2021
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies A Rhie, BP Walenz, S Koren, AM Phillippy Genome biology 21, 1-27, 2020	2163	2020
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018	2053	2018
A framework for human microbiome research Nature 486 (7402), 215-221, 2012	1950	2012
Assembly algorithms for next-generation sequencing data JR Miller, S Koren, G Sutton Genomics 95 (6), 315-327, 2010	1647	2010
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014	1636	2014
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019	1564	2019
Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012	1217	2012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy Nature biotechnology 33 (6), 623-630, 2015	1107	2015
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017	1098	2017
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome Research 22 (3), 557-567, 2012	902	2012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... GigaScience 2 (1), 2047-217X-2-10, 2013	812	2013
Integrating Hi-C links with assembly graphs for chromosome-scale assembly J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ... PLoS computational biology 15 (8), e1007273, 2019	800	2019
Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020	778	2020
Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012	700	2012
Aggressive assembly of pyrosequencing reads with mates JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ... Bioinformatics 24 (24), 2818-2824, 2008	682	2008

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