Todd J. Treangen

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Sergey KorenAssociate Investigator, NHGRI/NIHE-mail confirmado em nih.gov
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIHE-mail confirmado em nih.gov
Mihai PopProfessor of Computer Science, University of Maryland, College ParkE-mail confirmado em umd.edu
Ryan Leo ElworthPostdoctoral Scientist, Rice UniversityE-mail confirmado em rice.edu
Brian OndovYale School of MedicineE-mail confirmado em yale.edu
Nicolae SapovalPostdoctoral Researcher, Department of Computer Science, Rice UniversityE-mail confirmado em rice.edu
Nicholas BergmanDirector, National Biodefense Analysis and Countermeasures CenterE-mail confirmado em st.dhs.gov
Michael NuteRice UniversityE-mail confirmado em rice.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityE-mail confirmado em jhu.edu
Sonia VillapolHouston Methodist Research InstituteE-mail confirmado em houstonmethodist.org
Bryce KilleRice UniversityE-mail confirmado em rice.edu
Advait BalajiRice UniversityE-mail confirmado em rice.edu
Kristen D. CurryPhD student in Computer Science, Rice UniversityE-mail confirmado em rice.edu
Eduardo RochaCNRS, Institut PasteurE-mail confirmado em pasteur.fr
Daniel D SommerNational Biodefense Analysis and Countermeasures CenterE-mail confirmado em nbacc.dhs.gov
Lauren B. StadlerRice UniversityE-mail confirmado em rice.edu
Yunxi LiuDepartment of Computer Science, Rice UniversityE-mail confirmado em rice.edu
Krista (Fritz) TernusSignature Science, LLCE-mail confirmado em signaturescience.com
Aaron DarlingIndependentE-mail confirmado em illumina.com
Páll MelstedProfessor of Computer Science, University of IcelandE-mail confirmado em hi.is

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Todd J. Treangen

Associate Professor, Department of Computer Science, Rice University

E-mail confirmado em rice.edu - Página inicial

Bioinformatics Computational Genomics Metagenomics


Título Ordenar por citações Ordenar por ano Ordenar por título	Citado por Citado por	Ano
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	11051	2012
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016	2867	2016
Repetitive DNA and next-generation sequencing: computational challenges and solutions TJ Treangen, SL Salzberg Nature Reviews Genetics, 2011	2114	2011
A framework for human microbiome research Nature 486 (7402), 215-221, 2012	1784	2012
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014	1636	2014
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012	902	2012
Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012	700	2012
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes TJ Treangen, EPC Rocha PLoS genetics 7 (1), e1001284, 2011	582	2011
Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012	495	2012
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ... Cell 183 (5), 1185-1201. e20, 2020	287	2020
Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022	272	2022
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences B Liu, T Gibbons, M Ghodsi, T Treangen, M Pop BMC Genomics 12 (Suppl 2), S4, 2011	265	2011
Next generation sequence assembly with AMOS TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop Current Protocols in Bioinformatics 33 (1), 11.8. 1-11.8. 18, 2011	265	2011
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ... Genome Biology 14 (1), R2, 2013	240	2013
A new rhesus macaque assembly and annotation for next-generation sequencing analyses AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ... Biology direct 9, 1-15, 2014	196	2014
Genesis, effects and fates of repeats in prokaryotic genomes TJ Treangen, AL Abraham, M Touchon, EPC Rocha FEMS microbiology reviews 33 (3), 539-571, 2009	186	2009
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data KD Curry, Q Wang, MG Nute, A Tyshaieva, E Reeves, S Soriano, Q Wu, ... Nature methods 19 (7), 845-853, 2022	174	2022
Bambus 2: scaffolding metagenomes S Koren, TJ Treangen, M Pop Bioinformatics 27 (21), 2964-2971, 2011	173	2011
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification DJ Nasko, S Koren, AM Phillippy, TJ Treangen Genome biology 19, 1-10, 2018	172	2018
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ... Briefings in bioinformatics 20 (4), 1140-1150, 2019	164	2019

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