| Genome sequence and analysis of the tuber crop potato X Xu, P Pan, S Cheng, B Zhang, D Mu, P Ni, G Zhang, S Yang, R Li, ... Springer, 2011 | 2153 | 2011 |
| Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori, WR McCombie, ... Rice 6, 1-10, 2013 | 1922 | 2013 |
| Insights into the maize pan-genome and pan-transcriptome CN Hirsch, JM Foerster, JM Johnson, RS Sekhon, G Muttoni, ... The Plant Cell 26 (1), 121-135, 2014 | 564 | 2014 |
| An expanded maize gene expression atlas based on RNA sequencing and its use to explore root development SC Stelpflug, RS Sekhon, B Vaillancourt, CN Hirsch, CR Buell, N de Leon, ... The plant genome 9 (1), plantgenome2015.04.0025, 2016 | 375 | 2016 |
| Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato MA Hardigan, FPE Laimbeer, L Newton, E Crisovan, JP Hamilton, ... Proceedings of the National Academy of Sciences 114 (46), E9999-E10008, 2017 | 370 | 2017 |
| Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution RM Davidson, M Gowda, G Moghe, H Lin, B Vaillancourt, SH Shiu, ... The Plant Journal 71 (3), 492-502, 2012 | 249 | 2012 |
| Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement S Wu, KH Lau, Q Cao, JP Hamilton, H Sun, C Zhou, L Eserman, ... Nature communications 9 (1), 4580, 2018 | 240 | 2018 |
| Marker density and read depth for genotyping populations using genotyping-by-sequencing TM Beissinger, CN Hirsch, RS Sekhon, JM Foerster, JM Johnson, ... Genetics 193 (4), 1073-1081, 2013 | 237 | 2013 |
| Genome‐guided investigation of plant natural product biosynthesis F Kellner, J Kim, BJ Clavijo, JP Hamilton, KL Childs, B Vaillancourt, ... The Plant Journal 82 (4), 680-692, 2015 | 233 | 2015 |
| Construction of a chromosome-scale long-read reference genome assembly for potato GM Pham, JP Hamilton, JC Wood, JT Burke, H Zhao, B Vaillancourt, S Ou, ... Gigascience 9 (9), giaa100, 2020 | 219 | 2020 |
| Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing CN Hansey, B Vaillancourt, RS Sekhon, N De Leon, SM Kaeppler, ... PloS one 7 (3), e33071, 2012 | 193 | 2012 |
| Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species E Gongora-Castillo, KL Childs, G Fedewa, JP Hamilton, DK Liscombe, ... PloS one 7 (12), e52506, 2012 | 191 | 2012 |
| Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum MA Hardigan, E Crisovan, JP Hamilton, J Kim, P Laimbeer, CP Leisner, ... The Plant Cell 28 (2), 388-405, 2016 | 187 | 2016 |
| Utility of RNA sequencing for analysis of maize reproductive transcriptomes RM Davidson, CN Hansey, M Gowda, KL Childs, H Lin, B Vaillancourt, ... The Plant Genome 4 (3), 2011 | 155 | 2011 |
| An updated gene atlas for maize reveals organ‐specific and stress‐induced genes GM Hoopes, JP Hamilton, JC Wood, E Esteban, A Pasha, B Vaillancourt, ... The Plant Journal 97 (6), 1154-1167, 2019 | 135 | 2019 |
| Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 6 (1): 4 Y Kawahara, M De la Bastide, JP Hamilton, H Kanamori, WR McCombie, ... | 134 | 2013 |
| Phylogenomic mining of the mints reveals multiple mechanisms contributing to the evolution of chemical diversity in Lamiaceae B Boachon, CR Buell, E Crisovan, N Dudareva, N Garcia, G Godden, ... Molecular plant 11 (8), 1084-1096, 2018 | 131 | 2018 |
| Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding CD Hirsch, JP Hamilton, KL Childs, J Cepela, E Crisovan, B Vaillancourt, ... The Plant Genome 7 (1), plantgenome2013.12.0042, 2014 | 127 | 2014 |
| Genome-wide association analysis of stalk biomass and anatomical traits in maize M Mazaheri, M Heckwolf, B Vaillancourt, JL Gage, B Burdo, S Heckwolf, ... BMC plant biology 19, 1-17, 2019 | 126 | 2019 |
| Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity G Hoopes, X Meng, JP Hamilton, SR Achakkagari, FAF Guesdes, ... Molecular plant 15 (3), 520-536, 2022 | 117 | 2022 |