| Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia P Ntziachristos, A Tsirigos, PV Vlierberghe, J Nedjic, T Trimarchi, ... Nature medicine 18 (2), 298-302, 2012 | 612 | 2012 |
| Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers AR Parikh, I Leshchiner, L Elagina, L Goyal, C Levovitz, G Siravegna, ... Nature medicine 25 (9), 1415-1421, 2019 | 473 | 2019 |
| The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color JC Motamayor, K Mockaitis, J Schmutz, N Haiminen, DL Iii, O Cornejo, ... Genome biology 14, 1-25, 2013 | 317 | 2013 |
| Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma NJ Haradhvala, MB Leick, K Maurer, SH Gohil, RC Larson, N Yao, ... Nature medicine 28 (9), 1848-1859, 2022 | 161 | 2022 |
| Textual data compression in computational biology: a synopsis R Giancarlo, D Scaturro, F Utro Bioinformatics 25 (13), 1575-1586, 2009 | 131 | 2009 |
| Parallel genomic alterations of antigen and payload targets mediate polyclonal acquired clinical resistance to sacituzumab govitecan in triple-negative breast cancer JT Coates, S Sun, I Leshchiner, N Thimmiah, EE Martin, D McLoughlin, ... Cancer discovery 11 (10), 2436-2445, 2021 | 126 | 2021 |
| Enhancing next‐generation sequencing‐guided cancer care through cognitive computing NM Patel, VV Michelini, JM Snell, S Balu, AP Hoyle, JS Parker, ... The oncologist 23 (2), 179-185, 2018 | 115 | 2018 |
| Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer R Giancarlo, D Scaturro, F Utro BMC bioinformatics 9, 1-19, 2008 | 77 | 2008 |
| Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies R Giancarlo, SE Rombo, F Utro Briefings in bioinformatics 15 (3), 390-406, 2014 | 65 | 2014 |
| Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome EM Parry, I Leshchiner, R Guièze, C Johnson, E Tausch, SA Parikh, ... Nature medicine 29 (1), 158-169, 2023 | 58 | 2023 |
| Pirtobrutinib targets BTK C481S in ibrutinib-resistant CLL but second-site BTK mutations lead to resistance A Naeem, F Utro, Q Wang, J Cha, M Vihinen, S Martindale, Y Zhou, Y Ren, ... Blood advances 7 (9), 1929-1943, 2023 | 56 | 2023 |
| GenomicTools: a computational platform for developing high-throughput analytics in genomics A Tsirigos, N Haiminen, E Bilal, F Utro Bioinformatics 28 (2), 282-283, 2012 | 54 | 2012 |
| Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ... Neurology: Genetics 3 (4), e164, 2017 | 45 | 2017 |
| Functional profiling of COVID-19 respiratory tract microbiomes N Haiminen, F Utro, E Seabolt, L Parida Scientific Reports 11 (1), 6433, 2021 | 33* | 2021 |
| Driver gene classification reveals a substantial overrepresentation of tumor suppressors among very large chromatin-regulating proteins Z Waks, O Weissbrod, B Carmeli, R Norel, F Utro, Y Goldschmidt Scientific reports 6 (1), 38988, 2016 | 31 | 2016 |
| Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning R Giancarlo, SE Rombo, F Utro Bioinformatics 31 (18), 2939-2946, 2015 | 30 | 2015 |
| Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis R Giancarlo, F Utro Theoretical Computer Science 428, 58-79, 2012 | 27 | 2012 |
| Textual data compression in computational biology: Algorithmic techniques R Giancarlo, D Scaturro, F Utro Computer Science Review 6 (1), 1-25, 2012 | 24 | 2012 |
| Speeding up the Consensus Clustering methodology for microarray data analysis R Giancarlo, F Utro Algorithms for Molecular Biology 6, 1-13, 2011 | 23 | 2011 |
| The three steps of clustering in the post-genomic era: a synopsis R Giancarlo, GL Bosco, L Pinello, F Utro International Meeting on Computational Intelligence Methods for …, 2010 | 22 | 2010 |
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