| Intratumoral Tcf1+ PD-1+ CD8+ T cells with stem-like properties promote tumor control in response to vaccination and checkpoint blockade immunotherapy I Siddiqui, K Schaeuble, V Chennupati, SAF Marraco, S Calderon-Copete, ... Immunity 50 (1), 195-211. e10, 2019 | 1256 | 2019 |
| UCell: Robust and scalable single-cell gene signature scoring M Andreatta, SJ Carmona Computational and structural biotechnology journal 19, 3796-3798, 2021 | 408 | 2021 |
| Genomic-scale prioritization of drug targets: the TDR Targets database F Agüero, B Al-Lazikani, M Aslett, M Berriman, FS Buckner, RK Campbell, ... Nature reviews Drug discovery 7 (11), 900-907, 2008 | 365 | 2008 |
| Interpretation of T cell states from single-cell transcriptomics data using reference atlases M Andreatta, J Corria-Osorio, S Müller, R Cubas, G Coukos, SJ Carmona Nature communications 12 (1), 2965, 2021 | 326 | 2021 |
| Low-dose radiotherapy reverses tumor immune desertification and resistance to immunotherapy FG Herrera, C Ronet, M Ochoa de Olza, D Barras, I Crespo, M Andreatta, ... Cancer discovery 12 (1), 108-133, 2022 | 240 | 2022 |
| Identification of Attractive Drug Targets in Neglected-Disease Pathogens Using an In Silico Approach GJ Crowther, D Shanmugam, SJ Carmona, MA Doyle, C Hertz-Fowler, ... PLoS neglected tropical diseases 4 (8), e804, 2010 | 195 | 2010 |
| TDR Targets: a chemogenomics resource for neglected diseases MP Magariños, SJ Carmona, GJ Crowther, SA Ralph, DS Roos, ... Nucleic acids research 40 (D1), D1118-D1127, 2012 | 157 | 2012 |
| Myeloid antigen-presenting cell niches sustain antitumor T cells and license PD-1 blockade via CD28 costimulation J Duraiswamy, R Turrini, A Minasyan, D Barras, I Crespo, AJ Grimm, ... Cancer cell 39 (12), 1623-1642. e20, 2021 | 118 | 2021 |
| Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting J Schmidt, AR Smith, M Magnin, J Racle, JR Devlin, S Bobisse, J Cesbron, ... Cell Reports Medicine 2 (2), 2021 | 118 | 2021 |
| Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types SJ Carmona, SA Teichmann, L Ferreira, IC Macaulay, MJT Stubbington, ... Genome Research 27 (3), 451-461, 2017 | 114 | 2017 |
| Dissecting the treatment-naive ecosystem of human melanoma brain metastasis J Biermann, JC Melms, AD Amin, Y Wang, LA Caprio, A Karz, S Tagore, ... Cell 185 (14), 2591-2608. e30, 2022 | 106 | 2022 |
| Towards high-throughput immunomics for infectious diseases: use of next-generation peptide microarrays for rapid discovery and mapping of antigenic determinants SJ Carmona, M Nielsen, C Schafer-Nielsen, J Mucci, J Altcheh, V Balouz, ... Molecular & Cellular Proteomics, M114. 045906, 2015 | 104 | 2015 |
| Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq SJ Carmona*, I Siddiqui, M Bilous, W Held, D Gfeller* OncoImmunology 9 (1), 1737369 (*corresponding), 2020 | 58 | 2020 |
| Next-generation ELISA diagnostic assay for Chagas Disease based on the combination of short peptidic epitopes J Mucci*, SJ Carmona*, R Volcovich, J Altcheh, E Bracamonte, JD Marco PLoS Negl Trop Dis 11 (10), e0005972 (*joint first authors), 2017 | 50 | 2017 |
| Genome-wide analysis of 3′-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes JG De Gaudenzi, SJ Carmona, F Agüero, AC Frasch PeerJ 1, e118, 2013 | 47 | 2013 |
| Diagnostic peptide discovery: prioritization of pathogen diagnostic markers using multiple features SJ Carmona, PA Sartor, MS Leguizamón, OE Campetella, F Agüero PLOS One 7 (12), e50748, 2012 | 47 | 2012 |
| Mapping antigenic motifs in the trypomastigote small surface antigen from Trypanosoma cruzi V Balouz, MM Camara, GE Cánepa, SJ Carmona, R Volcovich, ... Clinical and vaccine immunology 22 (3), 304-312, 2015 | 45 | 2015 |
| scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets M Andreatta, AJ Berenstein, SJ Carmona Bioinformatics 38 (9), 2642-2644, 2022 | 44 | 2022 |
| STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data M Andreatta, SJ Carmona Bioinformatics 37 (6), 882-884, 2021 | 42 | 2021 |
| IL-10-expressing CAR T cells resist dysfunction and mediate durable clearance of solid tumors and metastases Y Zhao, J Chen, M Andreatta, B Feng, YQ Xie, M Wenes, Y Wang, M Gao, ... Nature Biotechnology, 1-12, 2024 | 41 | 2024 |
Massimo AndreattaLudwig Institute for Cancer Research, LausanneE-mail confirmado em unil.ch
