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Scott Le Grand
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Amber 2023
DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ...
University of California, San Francisco, 2023
59432023
Routine microsecond molecular dynamics simulations with AMBER on GPUs. 2. Explicit solvent particle mesh Ewald
R Salomon-Ferrer, AW Gotz, D Poole, S Le Grand, RC Walker
Journal of chemical theory and computation 9 (9), 3878-3888, 2013
33192013
Routine microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized born
AW Gotz, MJ Williamson, D Xu, D Poole, S Le Grand, RC Walker
Journal of chemical theory and computation 8 (5), 1542-1555, 2012
20872012
Long-time-step molecular dynamics through hydrogen mass repartitioning
CW Hopkins, S Le Grand, RC Walker, AE Roitberg
Journal of chemical theory and computation 11 (4), 1864-1874, 2015
11762015
SPFP: Speed without compromise—A mixed precision model for GPU accelerated molecular dynamics simulations
S Le Grand, AW Götz, RC Walker
Computer Physics Communications 184 (2), 374-380, 2013
11302013
Parallel computing experiences with CUDA
M Garland, S Le Grand, J Nickolls, J Anderson, J Hardwick, S Morton, ...
IEEE micro 28 (4), 13-27, 2008
8152008
Accelerating molecular dynamic simulation on graphics processing units
MS Friedrichs, P Eastman, V Vaidyanathan, M Houston, S Legrand, ...
Journal of computational chemistry 30 (6), 864-872, 2009
7012009
GPU-accelerated molecular dynamics and free energy methods in Amber18: performance enhancements and new features
TS Lee, DS Cerutti, D Mermelstein, C Lin, S LeGrand, TJ Giese, ...
Journal of chemical information and modeling 58 (10), 2043-2050, 2018
4062018
Rapid approximation to molecular surface area via the use of Boolean logic and look‐up tables
SM Le Grand, KM Merz Jr
Journal of Computational Chemistry 14 (3), 349-352, 1993
1641993
A force field for monosaccharides and (1→ 4) linked polysaccharides
TM Glennon, YJ Zheng, SM Le Grand, BA Shutzberg, KM Merz Jr
Journal of computational chemistry 15 (9), 1019-1040, 1994
1491994
Broad-phase collision detection with CUDA
LEG Scott
GPU gems 3, 697-722, 2007
1462007
The application of the genetic algorithm to the minimization of potential energy functions
SM Le Grand, KM Merz
Journal of Global Optimization 3, 49-66, 1993
1071993
Local moves: An efficient algorithm for simulation of protein folding
A Elofsson, SM Le Grand, D Eisenberg
Proteins: Structure, Function, and Bioinformatics 23 (1), 73-82, 1995
871995
GPU-accelerated drug discovery with docking on the summit supercomputer: Porting, optimization, and application to COVID-19 research
S LeGrand, A Scheinberg, AF Tillack, M Thavappiragasam, JV Vermaas, ...
Proceedings of the 11th ACM international conference on bioinformatics …, 2020
782020
A study of combined structure/sequence profiles
A Elofsson, D Fischer, DW Rice, SM Le Grand, D Eisenberg
Folding and Design 1 (6), 451-461, 1996
711996
High-throughput virtual laboratory for drug discovery using massive datasets
J Glaser, JV Vermaas, DM Rogers, J Larkin, S LeGrand, S Boehm, ...
The International Journal of High Performance Computing Applications 35 (5 …, 2021
452021
Controlling access to memory resources shared among parallel synchronizable threads
SM Le Grand
US Patent 8,108,659, 2012
432012
Conformational preferences for hydroxyl groups in substituted tetrahydropyrans
YJ Zheng, SM Le Grand, KM Merz Jr
Journal of computational chemistry 13 (6), 772-791, 1992
431992
The genetic algorithm and the conformational search of polypeptides and proteins
SM Le Grand, KM Merz Jr
Molecular Simulation 13 (4-5), 299-320, 1994
341994
Performing an occurence count of radices
SM Le Grand
US Patent 8,094,157, 2012
312012
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