| MAFFT multiple sequence alignment software version 7: improvements in performance and usability K Katoh, DM Standley Molecular biology and evolution 30 (4), 772-780, 2013 | 38388 | 2013 |
| The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection T Satoh, O Takeuchi, A Vandenbon, K Yasuda, Y Tanaka, Y Kumagai, ... Nature immunology 11 (10), 936-944, 2010 | 1255 | 2010 |
| Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay K Matsushita, O Takeuchi, DM Standley, Y Kumagai, T Kawagoe, ... Nature 458 (7242), 1185-1190, 2009 | 729 | 2009 |
| MAFFT-DASH: integrated protein sequence and structural alignment J Rozewicki, S Li, KM Amada, DM Standley, K Katoh Nucleic acids research 47 (W1), W5-W10, 2019 | 681 | 2019 |
| A simple method to control over-alignment in the MAFFT multiple sequence alignment program K Katoh, DM Standley Bioinformatics 32 (13), 1933-1942, 2016 | 539 | 2016 |
| MAFFT: iterative refinement and additional methods K Katoh, DM Standley Multiple sequence alignment methods, 131-146, 2014 | 494 | 2014 |
| Regnase-1 and roquin regulate a common element in inflammatory mRNAs by spatiotemporally distinct mechanisms T Mino, Y Murakawa, A Fukao, A Vandenbon, HH Wessels, D Ori, ... Cell 161 (5), 1058-1073, 2015 | 380 | 2015 |
| Malt1-induced cleavage of regnase-1 in CD4+ helper T cells regulates immune activation T Uehata, H Iwasaki, A Vandenbon, K Matsushita, E Hernandez-Cuellar, ... Cell 153 (5), 1036-1049, 2013 | 372 | 2013 |
| A mutation in the immunoproteasome subunit PSMB8 causes autoinflammation and lipodystrophy in humans A Kitamura, Y Maekawa, H Uehara, K Izumi, I Kawachi, M Nishizawa, ... The Journal of clinical investigation 121 (10), 4150-4160, 2011 | 333 | 2011 |
| The IκB kinase complex regulates the stability of cytokine-encoding mRNA induced by TLR–IL-1R by controlling degradation of regnase-1 H Iwasaki, O Takeuchi, S Teraguchi, K Matsushita, T Uehata, K Kuniyoshi, ... Nature immunology 12 (12), 1167-1175, 2011 | 311 | 2011 |
| A single polymorphic amino acid on Toxoplasma gondii kinase ROP16 determines the direct and strain-specific activation of Stat3 M Yamamoto, DM Standley, S Takashima, H Saiga, M Okuyama, ... Journal of Experimental Medicine 206 (12), 2747-2760, 2009 | 303 | 2009 |
| An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies Y Liu, WT Soh, J Kishikawa, M Hirose, EE Nakayama, S Li, M Sasai, ... Cell 184 (13), 3452-3466. e18, 2021 | 252 | 2021 |
| EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results S Liang, D Zheng, DM Standley, B Yao, M Zacharias, C Zhang BMC bioinformatics 11, 1-6, 2010 | 192 | 2010 |
| TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a KK Nyati, K Masuda, MMU Zaman, PK Dubey, D Millrine, JP Chalise, ... Nucleic acids research 45 (5), 2687-2703, 2017 | 172 | 2017 |
| Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ... Nucleic acids research 40 (D1), D453-D460, 2012 | 165 | 2012 |
| Blockade of TLR3 protects mice from lethal radiation-induced gastrointestinal syndrome N Takemura, T Kawasaki, J Kunisawa, S Sato, A Lamichhane, ... Nature communications 5 (1), 3492, 2014 | 163 | 2014 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 158 | 2011 |
| Outcome of a workshop on applications of protein models in biomedical research T Schwede, A Sali, B Honig, M Levitt, HM Berman, D Jones, SE Brenner, ... Structure 17 (2), 151-159, 2009 | 158 | 2009 |
| Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014 | 148 | 2014 |
| Antigen-independent activation enhances the efficacy of 4-1BB-costimulated CD22 CAR T cells N Singh, NV Frey, B Engels, DM Barrett, O Shestova, P Ravikumar, ... Nature medicine 27 (5), 842-850, 2021 | 129 | 2021 |
