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Pablo Carbonell
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An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals
P Carbonell, AJ Jervis, CJ Robinson, C Yan, M Dunstan, N Swainston, ...
Communications biology 1 (1), 66, 2018
2572018
RetroPath2. 0: a retrosynthesis workflow for metabolic engineers
B Delépine, T Duigou, P Carbonell, JL Faulon
Metabolic engineering 45, 158-170, 2018
2532018
Pathways to cellular supremacy in biocomputing
L Grozinger, M Amos, TE Gorochowski, P Carbonell, DA Oyarzún, R Stoof, ...
Nature communications 10 (1), 5250, 2019
1702019
Opportunities at the intersection of synthetic biology, machine learning, and automation
P Carbonell, T Radivojevic, H Garcia Martin
ACS synthetic biology 8 (7), 1474-1477, 2019
1442019
A retrosynthetic biology approach to metabolic pathway design for therapeutic production
P Carbonell, AG Planson, D Fichera, JL Faulon
BMC systems biology 5, 1-18, 2011
1392011
Nonlinear control of a pneumatic muscle actuator: backstepping vs. sliding-mode
P Carbonell, ZP Jiang, DW Repperger
Proceedings of the 2001 IEEE International Conference on Control …, 2001
1362001
XTMS: pathway design in an eXTended metabolic space
P Carbonell, P Parutto, J Herisson, SB Pandit, JL Faulon
Nucleic acids research 42 (W1), W389-W394, 2014
1272014
RetroRules: a database of reaction rules for engineering biology
T Duigou, M Du Lac, P Carbonell, JL Faulon
Nucleic acids research 47 (D1), D1229-D1235, 2019
1182019
Selenzyme: enzyme selection tool for pathway design
P Carbonell, J Wong, N Swainston, E Takano, NJ Turner, NS Scrutton, ...
Bioinformatics 34 (12), 2153-2154, 2018
1172018
Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli
AJ Jervis, P Carbonell, M Vinaixa, MS Dunstan, KA Hollywood, ...
ACS synthetic biology 8 (1), 127-136, 2018
1012018
Synthetic biology for pharmaceutical drug discovery
JY Trosset, P Carbonell
Drug design, development and therapy, 6285-6302, 2015
992015
Retropath: automated pipeline for embedded metabolic circuits
P Carbonell, P Parutto, C Baudier, C Junot, JL Faulon
ACS synthetic biology 3 (8), 565-577, 2014
992014
Molecular signatures-based prediction of enzyme promiscuity
P Carbonell, JL Faulon
Bioinformatics 26 (16), 2012-2019, 2010
982010
Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms
P Carbonell, D Fichera, SB Pandit, JL Faulon
BMC systems biology 6, 1-18, 2012
932012
Origins of specificity and promiscuity in metabolic networks
P Carbonell, G Lecointre, JL Faulon
Journal of Biological Chemistry 286 (51), 43994-44004, 2011
872011
Semisupervised Gaussian process for automated enzyme search
J Mellor, I Grigoras, P Carbonell, JL Faulon
ACS synthetic biology 5 (6), 518-528, 2016
782016
Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle
P Carbonell, A Currin, AJ Jervis, NJ Rattray, N Swainston, C Yan, ...
Natural product reports 33 (8), 925-932, 2016
782016
SensiPath: computer-aided design of sensing-enabling metabolic pathways
B Delépine, V Libis, P Carbonell, JL Faulon
Nucleic acids research 44 (W1), W226-W231, 2016
762016
Validation of RetroPath, a computer‐aided design tool for metabolic pathway engineering
T Fehér, AG Planson, P Carbonell, A Fernández‐Castané, I Grigoras, ...
Biotechnology journal 9 (11), 1446-1457, 2014
682014
Stereo signature molecular descriptor
P Carbonell, L Carlsson, JL Faulon
Journal of chemical information and modeling 53 (4), 887-897, 2013
682013
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