Paul P. Gardner

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	Wszystkie	Od 2020
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Alex BatemanHead of Protein Sequence Resources, EMBL-EBIZweryfikowany adres z ebi.ac.uk
Lars BarquistUniversity of Toronto; Helmholtz Institute for RNA-based Infection ResearchZweryfikowany adres z helmholtz-hiri.de
Eric P NawrockiNational Center for Biotechnology Information (NCBI), NLM, NIHZweryfikowany adres z ncbi.nlm.nih.gov
Jennifer DaubUniversity of EdinburghZweryfikowany adres z ed.ac.uk
Sarah BurgeDepartment of Oncology, University of CambridgeZweryfikowany adres z cam.ac.uk
Stinus LindgreenCurrent Member of ParliamentZweryfikowany adres z ft.dk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDZweryfikowany adres z ebi.ac.uk
Sean R. EddyHHMI & Harvard UniversityZweryfikowany adres z fas.harvard.edu
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterZweryfikowany adres z manchester.ac.uk
Nicole E WheelerResearch Fellow, University of BirminghamZweryfikowany adres z bham.ac.uk
Anthony M PooleSchool of Biological Sciences, University of Auckland, New ZealandZweryfikowany adres z auckland.ac.nz
Chun Shen LimDepartment of Biochemistry, University of Otago, Dunedin, New ZealandZweryfikowany adres z otago.ac.nz
Bikash Kumar BhandariEMBL-EBIZweryfikowany adres z ebi.ac.uk
Diana L KolbeResearch Scientist, IIHG, University of IowaZweryfikowany adres z uiowa.edu
Julian ParkhillUniversity of CambridgeZweryfikowany adres z cam.ac.uk
Peter FineranProfessor, Head of Phage-host interactions (Phi) laboratory,University of Otago, New ZealandZweryfikowany adres z otago.ac.nz
Nick ThomsonProfessor of Bacterial Evolution and GenomicsZweryfikowany adres z sanger.ac.uk
Robert A KingsleyGroup Leader at the Quadram Institute Bioscience, UKZweryfikowany adres z quadram.ac.uk
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenZweryfikowany adres z di.ku.dk
Eva FreyhultUppsala UniversityZweryfikowany adres z nbis.se

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Paul P. Gardner

University of Otago, New Zealand

Zweryfikowany adres z otago.ac.nz

ncRNA Bioinformatics Genome variation Benchmarking


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
Rfam 12.0: updates to the RNA families database EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ... Nucleic acids research 43 (D1), D130-D137, 2015	1119	2015
Comparative genomics reveals insights into avian genome evolution and adaptation G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ... Science 346 (6215), 1311-1320, 2014	1102	2014
Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl 1), D136-D140, 2009	1010	2009
Rfam 11.0: 10 years of RNA families SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ... Nucleic acids research 41 (D1), D226-D232, 2013	933	2013
A comprehensive comparison of comparative RNA structure prediction approaches PP Gardner, R Giegerich BMC bioinformatics 5 (1), 140, 2004	490	2004
Rfam: Wikipedia, clans and the “decimal” release PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ... Nucleic acids research 39 (suppl 1), D141-D145, 2011	476	2011
A benchmark of multiple sequence alignment programs upon structural RNAs PP Gardner, A Wilm, S Washietl Nucleic acids research 33 (8), 2433-2439, 2005	372	2005
An evaluation of the accuracy and speed of metagenome analysis tools S Lindgreen, KL Adair, P Gardner Scientific Reports 6 (19), doi:10.1038/srep19233, 2016	363	2016
A strand-specific RNA–Seq analysis of the transcriptome of the typhoid bacillus salmonella typhi TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ... PLoS genetics 5 (7), 2009	287	2009
Convergent regulatory evolution and loss of flight in paleognathous birds TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu, NE Wheeler, PP Gardner, ... Science 364 (6435), 74-78, 2019	277	2019
Towards robust and repeatable sampling methods in eDNA based studies IA Dickie, S Boyer, H Buckley, RP Duncan, P Gardner, ID Hogg, ... Molecular Ecology Resources, 2018	207	2018
Essential guidelines for computational method benchmarking LM Weber, W Saelens, R Cannoodt, C Soneson, A Hapfelmeier, ... Genome Biology 20 (1), 125, 2019	170	2019
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture J Vinther, MM Hedegaard, PP Gardner, JS Andersen, P Arctander Nucleic acids research 34 (16), e107-e107, 2006	162	2006
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA EK Freyhult, JP Bollback, PP Gardner Genome research 17 (1), 117-125, 2007	160	2007
The tuatara genome reveals ancient features of amniote evolution NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ... Nature, doi.org/10.1038/s41586-020-2561-9, 2020	152	2020
A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity LM Malone, SL Warring, SA Jackson, C Warnecke, PP Gardner, LF Gumy, ... Nature Microbiology 5 (1), 48-55, 2020	152	2020
A comparison of RNA folding measures E Freyhult, PP Gardner, V Moulton BMC bioinformatics 6 (1), 241, 2005	150	2005
Comparative genomic data of the Avian Phylogenomics Project G Zhang, B Li, C Li, MTP Gilbert, ED Jarvis, J Wang, TAG Consortium GigaScience 3 (26), doi:10.1186/2047-217X-3-26, 2014	145	2014
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium L Barquist, GC Langridge, DJ Turner, MD Phan, AK Turner, A Bateman, ... Nucleic acids research 41 (8), 4549-4564, 2013	137	2013
A VapBC Toxin-Antitoxin Module is a Post-Transcriptional Regulator of Metabolic Flux in Mycobacteria JL McKenzie, J Robson, M Berney, TC Smith, A Ruthe, PP Gardner, ... Journal of Bacteriology, 2012	119	2012

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