Thilo Muth

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Lennart MartensSenior Full Professor, Ghent University and VIB, BE; and Director of Research, CNRS, FRZweryfikowany adres z UGent.be
Erdmann RappHead of Bio/Process Analytics, Max Planck Institute for Dynamics of Complex Technical SystemsZweryfikowany adres z mpi-magdeburg.mpg.de
Udo ReichlMax Planck Institute / Otto von Guericke University Magdeburg, GermanyZweryfikowany adres z mpi-magdeburg.mpg.de
Bernhard RenardHasso Plattner InstituteZweryfikowany adres z hpi.de
Dirk BenndorfProf. Microbiology, Anhalt University of Applied ScienceZweryfikowany adres z hs-anhalt.de
Robert HeyerISAS DortmundZweryfikowany adres z ISAS.de
Harald BarsnesProfessor, University of BergenZweryfikowany adres z uib.no
Tim Van Den BosscheVIB - UGent Center for Medical Biotechnology; Ghent UniversityZweryfikowany adres z ugent.be
Bart MesuereGhent UniversityZweryfikowany adres z ugent.be
Marc VaudelDepartment of Clinical Science, University of Bergen, NorwayZweryfikowany adres z uib.no
Albert SickmannZweryfikowany adres z isas.de
Alessandro TancaSenior Researcher, Unit of Microbiology and Virology, University Hospital of SassariZweryfikowany adres z uniss.it
Sergio UzzauProfessor of Microbiology and Clinical Microbiology, University of SassariZweryfikowany adres z uniss.it
Pratik JagtapResearch Assistant Professor, University of MinnesotaZweryfikowany adres z umn.edu
Muzaffer ArıkanIstanbul UniversityZweryfikowany adres z istanbul.edu.tr
Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandZweryfikowany adres z wur.nl
Markku VarjosaloUniversity of HelsinkiZweryfikowany adres z helsinki.fi
Gunter SaakeProfessor of Computer Science, Magdeburg UniversityZweryfikowany adres z ovgu.de
Jana SeifertUniversity of HohenheimZweryfikowany adres z uni-hohenheim.de
Denis BeslicPhD student, Robert Koch Institute, ZKI-PH3Zweryfikowany adres z rki.de

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Thilo Muth

Head of Data Competence Center (MF 2), Robert Koch Institute (RKI) and PD at FU Berlin, Germany

Zweryfikowany adres z rki.de

Bioinformatics Public Health Metaproteomics Computational Mass Spectrometry


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research JE Huffman, M Pučić-Baković, L Klarić, R Hennig, MHJ Selman, ... Molecular & Cellular Proteomics 13 (6), 1598-1610, 2014	213	2014
The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation T Muth, A Behne, R Heyer, F Kohrs, D Benndorf, M Hoffmann, M Lehteva, ... Journal of proteome research 14 (3), 1557-1565, 2015	196	2015
Navigating through metaproteomics data: a logbook of database searching T Muth, CA Kolmeder, J Salojärvi, S Keskitalo, M Varjosalo, FJ Verdam, ... Proteomics 15 (20), 3439-3453, 2015	134	2015
The impact of sequence database choice on metaproteomic results in gut microbiota studies A Tanca, A Palomba, C Fraumene, D Pagnozzi, V Manghina, M Deligios, ... Microbiome 4, 1-13, 2016	133	2016
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? T Muth, BY Renard Briefings in bioinformatics 19 (5), 954-970, 2018	127	2018
Searching for a needle in a stack of needles: challenges in metaproteomics data analysis T Muth, D Benndorf, U Reichl, E Rapp, L Martens Molecular BioSystems 9 (4), 578-585, 2013	114	2013
ms_lims, a simple yet powerful open source laboratory information management system for MS‐driven proteomics K Helsens, N Colaert, H Barsnes, T Muth, K Flikka, A Staes, E Timmerman, ... Proteomics 10 (6), 1261-1264, 2010	99	2010
Metaproteomic data analysis at a glance: advances in computational microbial community proteomics T Muth, BY Renard, L Martens Expert review of proteomics 13 (8), 757-769, 2016	97	2016
Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis H Schiebenhoefer, T Van Den Bossche, S Fuchs, BY Renard, T Muth, ... Expert Review of Proteomics 16 (5), 375-390, 2019	96	2019
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ... Nature communications 12 (1), 7305, 2021	90	2021
A robust and universal metaproteomics workflow for research studies and routine diagnostics within 24 h using phenol extraction, FASP digest, and the MetaProteomeAnalyzer R Heyer, K Schallert, A Büdel, R Zoun, S Dorl, A Behne, F Kohrs, ... Frontiers in Microbiology 10, 1883, 2019	86	2019
DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra T Muth, L Weilnböck, E Rapp, CG Huber, L Martens, M Vaudel, ... Journal of proteome research 13 (2), 1143-1146, 2014	86	2014
Colonic metaproteomic signatures of active bacteria and the host in obesity CA Kolmeder, J Ritari, FJ Verdam, T Muth, S Keskitalo, M Varjosalo, ... Proteomics 15 (20), 3544-3552, 2015	82	2015
An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action H Anzt, F Bach, S Druskat, F Löffler, A Loewe, BY Renard, G Seemann, ... F1000Research 9, 295, 2021	75	2021
A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane H Schiebenhoefer, K Schallert, BY Renard, K Trappe, E Schmid, ... Nature protocols 15 (10), 3212-3239, 2020	75	2020
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes T Van Den Bossche, MØ Arntzen, D Becher, D Benndorf, VGH Eijsink, ... Microbiome 9 (1), 243, 2021	74	2021
A potential golden age to come—current tools, recent use cases, and future avenues for de novo sequencing in proteomics T Muth, F Hartkopf, M Vaudel, BY Renard Proteomics 18 (18), 1700150, 2018	69	2018
XTandem Parser: an open‐source library to parse and analyse X! Tandem MS/MS search results T Muth, M Vaudel, H Barsnes, L Martens, A Sickmann Proteomics 10 (7), 1522-1524, 2010	68	2010
Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants F Kohrs, R Heyer, A Magnussen, D Benndorf, T Muth, A Behne, E Rapp, ... Anaerobe 29, 59-67, 2014	61	2014
Viewing the proteome: how to visualize proteomics data? E Oveland, T Muth, E Rapp, L Martens, FS Berven, H Barsnes Proteomics 15 (8), 1341-1355, 2015	60	2015

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