| The Quest for Orthologs orthology benchmark service in 2022 Y Nevers, TEM Jones, D Jyothi, B Yates, M Ferret, L Portell-Silva, L Codo, ... Nucleic Acids Research 50 (W1), W623-W632, 2022 | 49 | 2022 |
| FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity E Persson, M Castresana-Aguirre, D Buzzao, D Guala, ELL Sonnhammer Journal of Molecular Biology 433 (11), 166835, 2021 | 48 | 2021 |
| InParanoid-DIAMOND: faster orthology analysis with the InParanoid algorithm E Persson, ELL Sonnhammer Bioinformatics 38 (10), 2918-2919, 2022 | 27 | 2022 |
| Domainoid: domain-oriented orthology inference E Persson, M Kaduk, SK Forslund, ELL Sonnhammer BMC bioinformatics 20, 1-12, 2019 | 26 | 2019 |
| InParanoiDB 9: ortholog groups for protein domains and full-length proteins E Persson, ELL Sonnhammer Journal of Molecular Biology 435 (14), 168001, 2023 | 21 | 2023 |
| PathBIX—a web server for network-based pathway annotation with adaptive null models M Castresana-Aguirre, E Persson, ELL Sonnhammer Bioinformatics Advances 1 (1), vbab010, 2021 | 7 | 2021 |
| FunCoup 6: advancing functional association networks across species with directed links and improved user experience D Buzzao, E Persson, D Guala, ELL Sonnhammer Nucleic Acids Research, gkae1021, 2024 | 2 | 2024 |
| Big data networks and orthology analysis E Persson Department of Biochemistry and Biophysics, Stockholm University, 2023 | | 2023 |
