| MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data I Uchiyama, M Mihara, H Nishide, H Chiba Nucleic acids research 43 (D1), D270-D276, 2015 | 70 | 2015 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 1-13, 2014 | 70 | 2014 |
| CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses A Hatano, H Chiba, HA Moesa, T Taniguchi, S Nagaie, K Yamanegi, ... Database 2011, 2011 | 58 | 2011 |
| MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons I Uchiyama, M Mihara, H Nishide, H Chiba, M Kato Nucleic acids research 47 (D1), D382-D389, 2019 | 48 | 2019 |
| MBGD update 2013: the microbial genome database for exploring the diversity of microbial world I Uchiyama, M Mihara, H Nishide, H Chiba Nucleic acids research 41 (D1), D631-D635, 2012 | 43 | 2012 |
| The Orthology Ontology: development and applications JT Fernández-Breis, H Chiba, MDC Legaz-García, I Uchiyama Journal of biomedical semantics 7, 1-11, 2016 | 27 | 2016 |
| Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data H Chiba, H Nishide, I Uchiyama PloS one 10 (4), e0122802, 2015 | 26 | 2015 |
| Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs H Chiba, R Yamashita, K Kinoshita, K Nakai BMC genomics 9, 1-15, 2008 | 23 | 2008 |
| Mapping RDF graphs to property graphs S Matsumoto, R Yamanaka, H Chiba arXiv preprint arXiv:1812.01801, 2018 | 19 | 2018 |
| G2GML: Graph to graph mapping language for bridging RDF and property graphs H Chiba, R Yamanaka, S Matsumoto International Semantic Web Conference, 160-175, 2020 | 18 | 2020 |
| TogoGenome/TogoStanza: modularized Semantic Web genome database T Katayama, S Kawashima, S Okamoto, Y Moriya, H Chiba, Y Naito, ... Database 2019, bay132, 2019 | 14 | 2019 |
| TogoID: an exploratory ID converter to bridge biological datasets S Ikeda, H Ono, T Ohta, H Chiba, Y Naito, Y Moriya, S Kawashima, ... Bioinformatics 38 (17), 4194-4199, 2022 | 12 | 2022 |
| Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score H Chiba, I Uchiyama BMC bioinformatics 15, 1-16, 2014 | 12 | 2014 |
| Leveraging logical rules for efficacious representation of large orthology datasets TM de Farias, H Chiba, JT Fernández-Breis Proceedings of the 10th International Semantic Web Applications and Tools …, 2017 | 10 | 2017 |
| SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases H Chiba, I Uchiyama BMC bioinformatics 18, 1-6, 2017 | 10 | 2017 |
| BioHackathon 2015: Semantics of data for life sciences and reproducible research RA Vos, T Katayama, H Mishima, S Kawano, S Kawashima, JD Kim, ... F1000Research 9, 136, 2020 | 8 | 2020 |
| Property graph exchange format H Chiba, R Yamanaka, S Matsumoto arXiv preprint arXiv:1907.03936, 2019 | 7 | 2019 |
| Towards the Semantic Standardization of Orthology Content. JT Fernández-Breis, MDC Legaz-García, H Chiba, I Uchiyama SWAT4LS, 74-83, 2015 | 5 | 2015 |
| Exploring Disease Model Mouse Using Knowledge Graphs: Combining Gene Expression, Orthology, and Disease Datasets T Kushida, TM de Farias, AC Sima, C Dessimoz, H Chiba, FB Bastian, ... bioRxiv, 2023.08. 30.555283, 2023 | 4 | 2023 |
| Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets T Mendes de Farias, T Kushida, AC Sima, C Dessimoz, H Chiba, ... SWAT4HCLS 2023: The 14th International Conference on Semantic Web …, 2023 | 2 | 2023 |
