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Andriy Kovalenko
Andriy Kovalenko
Adjunct Professor Department of Mechanical Engineering University of Alberta
Zweryfikowany adres z ualberta.ca
Tytuł
Cytowane przez
Cytowane przez
Rok
Amber 2023
DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ...
University of California, San Francisco, 2023
59392023
Self-consistent description of a metal–water interface by the Kohn–Sham density functional theory and the three-dimensional reference interaction site model
A Kovalenko, F Hirata
The Journal of chemical physics 110 (20), 10095-10112, 1999
7651999
ADF2017, SCM, Theoretical Chemistry, Vrije Universiteit, Amsterdam, The Netherlands
EJ Baerends, T Ziegler, J Autschbach, D Bashford, A Bérces, ...
ADF. Available online: http://www. scm. com (accessed on 20 April 2020), 2014
752*2014
AMBER 14; University of California: San Francisco, 2014
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...
There is no corresponding record for this reference, 1-826, 2014
749*2014
Three-dimensional density profiles of water in contact with a solute of arbitrary shape: a RISM approach
A Kovalenko, F Hirata
Chemical Physics Letters 290 (1-3), 237-244, 1998
5021998
AMBER 20
DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California: San Francisco, CA, USA, 2020
3722020
Potentials of mean force of simple ions in ambient aqueous solution. I. Three-dimensional reference interaction site model approach
A Kovalenko, F Hirata
The Journal of Chemical Physics 112 (23), 10391-10402, 2000
3392000
Three-dimensional molecular theory of solvation coupled with molecular dynamics in Amber
T Luchko, S Gusarov, DR Roe, C Simmerling, DA Case, J Tuszynski, ...
Journal of chemical theory and computation 6 (3), 607-624, 2010
2972010
Solution of three‐dimensional reference interaction site model and hypernetted chain equations for simple point charge water by modified method of direct inversion in iterative …
A Kovalenko, S Ten‐no, F Hirata
Journal of Computational Chemistry 20 (9), 928-936, 1999
2801999
Diazonium-derived aryl films on gold nanoparticles: Evidence for a carbon–gold covalent bond
L Laurentius, SR Stoyanov, S Gusarov, A Kovalenko, R Du, GP Lopinski, ...
ACS nano 5 (5), 4219-4227, 2011
2582011
The FF14SB force field
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...
Amber 14, 29-31, 2014
2572014
Potential of mean force between two molecular ions in a polar molecular solvent: A study by the three-dimensional reference interaction site model
A Kovalenko, F Hirata
The Journal of Physical Chemistry B 103 (37), 7942-7957, 1999
2261999
Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm
D Ridgway, G Broderick, A Lopez-Campistrous, M Ru’aini, P Winter, ...
Biophysical journal 94 (10), 3748-3759, 2008
2222008
Molecular basis for water-promoted supramolecular chirality inversion in helical rosette nanotubes
RS Johnson, T Yamazaki, A Kovalenko, H Fenniri
Journal of the American Chemical Society 129 (17), 5735-5743, 2007
2142007
Hydration free energy of hydrophobic solutes studied by a reference interaction site model with a repulsive bridge correction and a thermodynamic perturbation method
A Kovalenko, F Hirata
The Journal of Chemical Physics 113 (7), 2793-2805, 2000
2012000
ADF2017
EJ Baerends, T Ziegler, AJ Atkins, J Autschbach, D Bashford, O Baseggio, ...
SCM, Theoretical Chemistry, 2017
1972017
Helical rosette nanotubes with tunable stability and hierarchy
JG Moralez, J Raez, T Yamazaki, RK Motkuri, A Kovalenko, H Fenniri
Journal of the American Chemical Society 127 (23), 8307-8309, 2005
1922005
Water molecules in a protein cavity detected by a statistical− mechanical theory
T Imai, R Hiraoka, A Kovalenko, F Hirata
Journal of the American Chemical Society 127 (44), 15334-15335, 2005
1822005
Potentials of mean force of simple ions in ambient aqueous solution. II. Solvation structure from the three-dimensional reference interaction site model approach, and …
A Kovalenko, F Hirata
The Journal of Chemical Physics 112 (23), 10403-10417, 2000
1742000
An MM/3D-RISM approach for ligand binding affinities
S Genheden, T Luchko, S Gusarov, A Kovalenko, U Ryde
The Journal of Physical Chemistry B 114 (25), 8505-8516, 2010
1722010
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