Alper Kucukural

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Manuel GarberUniversity of Massachusetts Medical SchoolZweryfikowany adres z umassmed.edu
Melissa J. MooreModerna Therapeutics/UMass Medical SchoolZweryfikowany adres z umassmed.edu
Oliver RandoProfessor of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical SchoolZweryfikowany adres z umassmed.edu
Yang ZhangNational University of SingaporeZweryfikowany adres z nus.edu.sg
Upasna SharmaAssistant Professor, University of California Santa CruzZweryfikowany adres z ucsc.edu
Jeremy LubanUMass Med, Broad Institute of MIT and Harvard, Ragon Institute of MGH, MIT, & Harvard; MassCPRZweryfikowany adres z umassmed.edu
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolZweryfikowany adres z umassmed.edu
Nathan LawsonProfessor, University of Massachusetts Medical SchoolZweryfikowany adres z umassmed.edu
Osman Ugur SezermanAcibadem UniversityZweryfikowany adres z acibadem.edu.tr
Frederick P (Fritz) RothUniversity of Pittsburgh School of Medicine, Department of Computational & Systems BiologyZweryfikowany adres z pitt.edu
Roger J DavisH. Arthur Smith Professor & Chair, Program in Molecular Medicine, UMASS Medical SchoolZweryfikowany adres z Umassmed.edu
Silvia CorveraUniversity of Massachusetts Medical SchoolZweryfikowany adres z umassmed.edu
Jonathan LivnyAssociate Director, Infectious Disease and Microbiome Program, Broad Institute of MIT and HarvardZweryfikowany adres z broadinstitute.org
Mitchell GuttmanProfessor of Biology, California Institute of TechnologyZweryfikowany adres z lncrna.caltech.edu
Michele BusbyZweryfikowany adres z hartontherapeutics.com
GuangPing GaoZweryfikowany adres z umassmed.edu
Jane E FreedmanVanderbilt UniversityZweryfikowany adres z vumc.org
Michael ZillerDepartment of Psychiatry, University of MuensterZweryfikowany adres z uni-muenster.de
Alexander MeissnerMax Planck Institute for Molecular GeneticsZweryfikowany adres z molgen.mpg.de
Sarah J RichardsonUniversity of Exeter Medical SchoolZweryfikowany adres z exeter.ac.uk

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Alper Kucukural

Associate Professor, University of Massachusetts Medical School

Zweryfikowany adres z umassmed.edu - Strona główna

Computational Biology Bioinformatics Deep Sequencing RNA-Seq data analysis Clustering


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
I-TASSER: a unified platform for automated protein structure and function prediction A Roy, A Kucukural, Y Zhang Nature protocols 5 (4), 725-738, 2010	7480	2010
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals U Sharma, CC Conine, JM Shea, A Boskovic, AG Derr, XY Bing, ... Science 351 (6271), 391-396, 2016	1224	2016
Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes*♦ CF Sephton, C Cenik, A Kucukural, EB Dammer, B Cenik, YH Han, ... Journal of biological chemistry 286 (2), 1204-1215, 2011	519	2011
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus G Singh, A Kucukural, C Cenik, JD Leszyk, SA Shaffer, Z Weng, MJ Moore Cell 151 (4), 750-764, 2012	388	2012
Novel observations from next-generation RNA sequencing of highly purified human adult and fetal islet cell subsets DM Blodgett, A Nowosielska, S Afik, S Pechhold, AJ Cura, NJ Kennedy, ... Diabetes 64 (9), 3172-3181, 2015	330	2015
Simultaneous generation of many RNA-seq libraries in a single reaction AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ... Nature methods 12 (4), 323-325, 2015	289	2015
DEBrowser: interactive differential expression analysis and visualization tool for count data A Kucukural, O Yukselen, DM Ozata, MJ Moore, M Garber BMC genomics 20, 1-12, 2019	250	2019
Ebola virus glycoprotein with increased infectivity dominated the 2013–2016 epidemic WE Diehl, AE Lin, ND Grubaugh, LM Carvalho, K Kim, PP Kyawe, ... Cell 167 (4), 1088-1098. e6, 2016	231	2016
Genetic and epigenetic variation, but not diet, shape the sperm methylome JM Shea, RW Serra, BR Carone, HP Shulha, A Kucukural, MJ Ziller, ... Developmental cell 35 (6), 750-758, 2015	160	2015
Staufen1 senses overall transcript secondary structure to regulate translation EP Ricci, A Kucukural, C Cenik, BC Mercier, G Singh, EE Heyer, ... Nature structural & molecular biology 21 (1), 26-35, 2014	156	2014
Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells SY Min, A Desai, Z Yang, A Sharma, T DeSouza, RMJ Genga, ... Proceedings of the National Academy of Sciences 116 (36), 17970-17979, 2019	143	2019
HLA class II antigen processing and presentation pathway components demonstrated by transcriptome and protein analyses of islet β-cells from donors with type 1 diabetes MA Russell, SD Redick, DM Blodgett, SJ Richardson, P Leete, L Krogvold, ... Diabetes 68 (5), 988-1001, 2019	131	2019
Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis S Beyaz, C Chung, H Mou, KE Bauer-Rowe, ME Xifaras, I Ergin, ... Cell Stem Cell 28 (11), 1922-1935. e5, 2021	116	2021
DolphinNext: A distributed data processing platform for high throughput genomics O Yukselen, O Turkyilmaz, AR Ozturk, M Garber, A Kucukural BMC genomics 21, 1-16, 2020	109	2020
An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes ND Lawson, R Li, M Shin, A Grosse, O Yukselen, OA Stone, A Kucukural, ... Elife 9, e55792, 2020	107	2020
Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans DM Özata, T Yu, H Mou, I Gainetdinov, C Colpan, K Cecchini, Y Kaymaz, ... Nature ecology & evolution 4 (1), 156-168, 2020	99	2020
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice J Wang, Y Zhang, CA Mendonca, O Yukselen, K Muneeruddin, L Ren, ... Nature 604 (7905), 343-348, 2022	91	2022
HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells Y Wang, L Lifshitz, K Gellatly, CL Vinton, K Busman-Sahay, S McCauley, ... Nature immunology 21 (3), 274-286, 2020	84	2020
An atlas of cell types in the mouse epididymis and vas deferens VD Rinaldi, E Donnard, K Gellatly, M Rasmussen, A Kucukural, ... elife 9, e55474, 2020	80	2020
Genomic characterization of endothelial enhancers reveals a multifunctional role for NR2F2 in regulation of arteriovenous gene expression S Sissaoui, J Yu, A Yan, R Li, O Yukselen, A Kucukural, LJ Zhu, ... Circulation research 126 (7), 875-888, 2020	59	2020

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