| Comprehensive molecular portraits of human breast tumours Brigham & Women’s Hospital & Harvard Medical School Chin Lynda 9 11 Park ... Nature 490 (7418), 61-70, 2012 | 11775 | 2012 |
| The immune landscape of cancer V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ... Immunity 48 (4), 812-830. e14, 2018 | 5055 | 2018 |
| Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas Cancer Genome Atlas Research Network New England Journal of Medicine 372 (26), 2481-2498, 2015 | 3112 | 2015 |
| Comprehensive molecular characterization of clear cell renal cell carcinoma Cancer Genome Atlas Research Network Analysis working group: Baylor College ... Nature 499 (7456), 43-49, 2013 | 3008 | 2013 |
| Comprehensive molecular characterization of urothelial bladder carcinoma Cancer Genome Atlas Research Network Nature 507 (7492), 315, 2014 | 2785 | 2014 |
| Integrated genomic characterization of papillary thyroid carcinoma N Agrawal, R Akbani, BA Aksoy, A Ally, H Arachchi, SL Asa, JT Auman, ... Cell 159 (3), 676-690, 2014 | 2771 | 2014 |
| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016 | 263 | 2016 |
| Phosphoproteome integration reveals patient-specific networks in prostate cancer JM Drake, EO Paull, NA Graham, JK Lee, BA Smith, B Titz, T Stoyanova, ... Cell 166 (4), 1041-1054, 2016 | 233 | 2016 |
| Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE) EO Paull, DE Carlin, M Niepel, PK Sorger, D Haussler, JM Stuart Bioinformatics 29 (21), 2757-2764, 2013 | 222 | 2013 |
| Pathway-based genomics prediction using generalized elastic net A Sokolov, DE Carlin, EO Paull, R Baertsch, JM Stuart PLoS computational biology 12 (3), e1004790, 2016 | 123 | 2016 |
| A modular master regulator landscape controls cancer transcriptional identity EO Paull, A Aytes, SJ Jones, PS Subramaniam, FM Giorgi, EF Douglass, ... Cell 184 (2), 334-351. e20, 2021 | 103 | 2021 |
| One-class detection of cell states in tumor subtypes A Sokolov, EO Paull, JM Stuart Biocomputing 2016: Proceedings of the Pacific Symposium, 405-416, 2016 | 103 | 2016 |
| Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling M Niepel, M Hafner, Q Duan, Z Wang, EO Paull, M Chung, X Lu, JM Stuart, ... Nature communications 8 (1), 1186, 2017 | 98 | 2017 |
| SJARACNe: a scalable software tool for gene network reverse engineering from big data A Khatamian, EO Paull, A Califano, J Yu Bioinformatics 35 (12), 2165-2166, 2019 | 51 | 2019 |
| The number of titrated microRNA species dictates ceRNA regulation HS Chiu, MR Martínez, EV . Komissarova, D Llobet-Navas, M Bansal, ... Nucleic acids research 46 (9), 4354-4369, 2018 | 35 | 2018 |
| The master regulator protein BAZ2B can reprogram human hematopoietic lineage-committed progenitors into a multipotent state K Arumugam, W Shin, V Schiavone, L Vlahos, X Tu, D Carnevali, ... Cell reports 33 (10), 2020 | 30 | 2020 |
| Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses J Broyde, DR Simpson, D Murray, EO Paull, BW Chu, S Tagore, SJ Jones, ... Nature biotechnology 39 (2), 215-224, 2021 | 24 | 2021 |
| A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ... Cell systems 5 (5), 485-497. e3, 2017 | 23 | 2017 |
| The UCSC Interaction Browser: multidimensional data views in pathway context CK Wong, CJ Vaske, S Ng, JZ Sanborn, SC Benz, D Haussler, JM Stuart Nucleic Acids Research 41 (W1), W218-W224, 2013 | 21 | 2013 |
| Molecular pathways: extracting medical knowledge from high-throughput genomic data TC Goldstein, EO Paull, MJ Ellis, JM Stuart Clinical Cancer Research 19 (12), 3114-3120, 2013 | 16 | 2013 |
Joshua M StuartUC Santa Cruz Genomics InstituteZweryfikowany adres z ucsc.edu