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Brian D. Weitzner
Brian D. Weitzner
Outpace Bio
Zweryfikowany adres z outpacebio.com - Strona główna
Tytuł
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Cytowane przez
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Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
7542020
De novo design of potent and selective mimics of IL-2 and IL-15
DA Silva, S Yu, UY Ulge, JB Spangler, KM Jude, C Labão-Almeida, LR Ali, ...
Nature 565 (7738), 186-191, 2019
5002019
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)
S Lyskov, FC Chou, SO Conchuir, BS Der, K Drew, D Kuroda, J Xu, ...
PloS one 8 (5), e63906, 2013
4622013
Benchmarking and analysis of protein docking performance in Rosetta v3. 2
S Chaudhury, M Berrondo, BD Weitzner, P Muthu, H Bergman, JJ Gray
PloS one 6 (8), e22477, 2011
3552011
Modeling and docking of antibody structures with Rosetta
BD Weitzner, JR Jeliazkov, S Lyskov, N Marze, D Kuroda, R Frick, ...
Nature protocols 12 (2), 401-416, 2017
2932017
OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization
G Ahdritz, N Bouatta, C Floristean, S Kadyan, Q Xia, W Gerecke, ...
Nature Methods 21 (8), 1514-1524, 2024
2502024
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
J Adolf-Bryfogle, O Kalyuzhniy, M Kubitz, BD Weitzner, X Hu, Y Adachi, ...
PLoS computational biology 14 (4), e1006112, 2018
2222018
An integrated framework advancing membrane protein modeling and design
RF Alford, J Koehler Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS computational biology 11 (9), e1004398, 2015
1812015
The origin of CDR H3 structural diversity
BD Weitzner, RL Dunbrack, JJ Gray
Structure 23 (2), 302-311, 2015
1162015
Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization
BD Weitzner, D Kuroda, N Marze, J Xu, JJ Gray
Proteins: Structure, Function, and Bioinformatics 82 (8), 1611-1623, 2014
1142014
Real-time PyMOL visualization for Rosetta and PyRosetta
EH Baugh, S Lyskov, BD Weitzner, JJ Gray
PloS one 6 (8), e21931, 2011
932011
Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites
P Hosseinzadeh, PR Watson, TW Craven, X Li, S Rettie, F Pardo-Avila, ...
Nature Communications 12 (1), 3384, 2021
642021
Designing peptides on a quantum computer
VK Mulligan, H Melo, HI Merritt, S Slocum, BD Weitzner, AM Watkins, ...
BioRxiv, 752485, 2019
592019
Accurate structure prediction of CDR H3 loops enabled by a novel structure-based C-terminal constraint
BD Weitzner, JJ Gray
The Journal of Immunology 198 (1), 505-515, 2017
492017
A computational method for design of connected catalytic networks in proteins
BD Weitzner, Y Kipnis, AG Daniel, D Hilvert, D Baker
Protein Science 28 (12), 2036-2041, 2019
412019
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLoS computational biology 16 (5), e1007507, 2020
402020
An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases
B Weitzner, T Meehan, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 75 (2), 289-295, 2009
242009
Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation
AS Ford, BD Weitzner, CD Bahl
Protein Science 29 (1), 43-51, 2020
182020
PyRosetta Jupyter notebooks teach biomolecular structure prediction and design
KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov, JW Labonte, S Bertolani, ...
The Biophysicist 2 (1), 108-122, 2021
162021
The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8
M Guttman, NN Padte, Y Huang, J Yu, GJ Rocklin, BD Weitzner, M Scian, ...
Scientific reports 10 (1), 14313, 2020
162020
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