| PRED-TMBB: a web server for predicting the topology of β-barrel outer membrane proteins PG Bagos, TD Liakopoulos, IC Spyropoulos, SJ Hamodrakas Nucleic acids research 32 (suppl_2), W400-W404, 2004 | 458 | 2004 |
| A consensus method for the prediction of ‘aggregation-prone’peptides in globular proteins AC Tsolis, NC Papandreou, VA Iconomidou, SJ Hamodrakas PloS one 8 (1), e54175, 2013 | 351 | 2013 |
| Cytokine gene polymorphisms in periodontal disease: a meta‐analysis of 53 studies including 4178 cases and 4590 controls GK Nikolopoulos, NL Dimou, SJ Hamodrakas, PG Bagos Journal of clinical periodontology 35 (9), 754-767, 2008 | 263 | 2008 |
| Amyloids protect the silkmoth oocyte and embryo VA Iconomidou, G Vriend, SJ Hamodrakas FEBS letters 479 (3), 141-145, 2000 | 251 | 2000 |
| A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins PG Bagos, TD Liakopoulos, IC Spyropoulos, SJ Hamodrakas BMC bioinformatics 5, 1-13, 2004 | 222 | 2004 |
| CAST: an iterative algorithm for the complexity analysis of sequence tracts VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ... Bioinformatics 16 (10), 915-922, 2000 | 215 | 2000 |
| A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm C Pasquier, VJ Promponas, GA Palaios, JS Hamodrakas, SJ Hamodrakas Protein Engineering 12 (5), 381-385, 1999 | 213 | 1999 |
| TMRPres2D: high quality visual representation of transmembrane protein models IC Spyropoulos, TD Liakopoulos, PG Bagos, SJ Hamodrakas Bioinformatics 20 (17), 3258-3260, 2004 | 185 | 2004 |
| Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta MR Kanost, EL Arrese, X Cao, YR Chen, S Chellapilla, MR Goldsmith, ... Insect biochemistry and molecular biology 76, 118-147, 2016 | 179 | 2016 |
| Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences MV Karouzou, Y Spyropoulos, VA Iconomidou, RS Cornman, ... Insect biochemistry and molecular biology 37 (8), 754-760, 2007 | 174 | 2007 |
| Amyloidogenic determinants are usually not buried KK Frousios, VA Iconomidou, CM Karletidi, SJ Hamodrakas BMC structural biology 9, 1-9, 2009 | 171 | 2009 |
| PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization EI Petsalaki, PG Bagos, ZI Litou, SJ Hamodrakas Genomics, Proteomics & Bioinformatics 4 (1), 48-55, 2006 | 159 | 2006 |
| Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas Journal of proteome research 7 (12), 5082-5093, 2008 | 148 | 2008 |
| Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method PG Bagos, TD Liakopoulos, SJ Hamodrakas BMC bioinformatics 6, 1-13, 2005 | 142 | 2005 |
| Cuticular proteins JH Willis, VA Iconomidou, RF Smith, SJ Hamodrakas Elsevier, 2005 | 133 | 2005 |
| Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003 | 122 | 2003 |
| CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models ZS Ioannidou, MC Theodoropoulou, NC Papandreou, JH Willis, ... Insect biochemistry and molecular biology 52, 51-59, 2014 | 120 | 2014 |
| Unique features of the structural model of ‘hard’cuticle proteins: implications for chitin–protein interactions and cross-linking in cuticle VA Iconomidou, JH Willis, SJ Hamodrakas Insect biochemistry and molecular biology 35 (6), 553-560, 2005 | 119 | 2005 |
| Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: a critical review and analysis of interacting surfaces, conformational … FA Baltoumas, MC Theodoropoulou, SJ Hamodrakas Journal of structural biology 182 (3), 209-218, 2013 | 109 | 2013 |
| Prediction of signal peptides in archaea PG Bagos, KD Tsirigos, SK Plessas, TD Liakopoulos, SJ Hamodrakas Protein Engineering, Design & Selection 22 (1), 27-35, 2009 | 107 | 2009 |
