Clémence Frioux

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Anne SiegelResearch Director, CNRS, IRISA (Rennes, France)Zweryfikowany adres z irisa.fr
Falk HildebrandGroup Leader, Quadram & Earlham Institute, Norwich, UKZweryfikowany adres z quadram.ac.uk
Simon DittamiStation Biologique de RoscoffZweryfikowany adres z sb-roscoff.fr
Arnaud BelcourInriaZweryfikowany adres z inria.fr
Gabriel V. MarkovUMR 8227 Integrative Biology of Marine Models, Station Biologique de RoscoffZweryfikowany adres z sb-roscoff.fr
Erwan CorreCNRS Station Biologique de Roscoff ABiMS platform FranceZweryfikowany adres z sb-roscoff.fr
Damien EveillardNantes Université, Centrale Nantes, CNRS, LS2N, Université de NantesZweryfikowany adres z univ-nantes.fr
Pamela FerrettiPostdoctoral Fellow, University of ChicagoZweryfikowany adres z uchicago.edu
Peer BorkDirector of EMBL HeidelbergZweryfikowany adres z embl.de
Mo BahramProfessor of microbial ecologyZweryfikowany adres z slu.se
Ezgi ÖzkurtQuadram Institute BioscienceZweryfikowany adres z quadram.ac.uk
Simon LabartheINRAZweryfikowany adres z inra.fr
Thierry TononCentre for Novel Agricultural Products, Department of Biology, University of YorkZweryfikowany adres z york.ac.uk
catherine boyenDirectrice de recherche CNRS RoscoffZweryfikowany adres z sb-roscoff.fr
Alejandro MaassCenter for Mathematical Modeling, University of ChileZweryfikowany adres z dim.uchile.cl
Olivier DameronUniversité de Rennes1Zweryfikowany adres z univ-rennes1.fr
Sebastian Nelson Mendoza, Ph.D.Center for Mathematical Modeling at University of ChileZweryfikowany adres z cmm.uchile.cl
Nicolas LoiraPostdoctoral Fellow, Center for Genome Regulation, University of ChileZweryfikowany adres z dim.uchile.cl
Toni I. GossmannProfessor for Computational Systems Biology, TU Dortmund UniversityZweryfikowany adres z tu-dortmund.de
Sven ThielePotassco Solutions GmbHZweryfikowany adres z potassco.com

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Clémence Frioux

Inria, Univ. Bordeaux, INRAE, 33400 Talence, France

Zweryfikowany adres z inria.fr - Strona główna

Bioinformatics Systems Biology Metabolic Models Microbiomes Knowledge Representation & Reasoning


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models M Aite, M Chevallier, C Frioux, C Trottier, J Got, MP Cortés, SN Mendoza, ... PLoS computational biology 14 (5), e1006146, 2018	121	2018
Dispersal strategies shape persistence and evolution of human gut bacteria F Hildebrand, TI Gossmann, C Frioux, E Özkurt, PN Myers, P Ferretti, ... Cell host & microbe 29 (7), 1167-1176. e9, 2021	105	2021
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks S Prigent, C Frioux, SM Dittami, S Thiele, A Larhlimi, G Collet, F Gutknecht, ... PLOS Computational Biology 13 (1), e1005276, 2017	103	2017
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes C Frioux, D Singh, T Korcsmaros, F Hildebrand Computational and Structural Biotechnology Journal 18, 1722-1734, 2020	95	2020
Metagenomic assessment of the global diversity and distribution of bacteria and fungi M Bahram, T Netherway, C Frioux, P Ferretti, LP Coelho, S Geisen, P Bork, ... Environmental Microbiology 23 (1), 316-326, 2021	86	2021
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species A Belcour, C Frioux, M Aite, A Bretaudeau, F Hildebrand, A Siegel Elife 9, e61968, 2020	80	2020
Enterosignatures define common bacterial guilds in the human gut microbiome C Frioux, R Ansorge, E Özkurt, CG Nedjad, J Fritscher, C Quince, ... Cell Host & Microbe 31 (7), 1111-1125. e6, 2023	53	2023
Metabolic complementarity between a brown alga and associated 1 cultivable bacteria provide indications of beneficial interactions B Burgunter-Delamare, H Kleinjan, C Frioux, E Fremy, SM Dittami, ... Frontiers in Marine Science, 2020	47	2020
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia C Frioux, E Fremy, C Trottier, A Siegel Bioinformatics 34 (17), i934-i943, 2018	39	2018
The genome of Ectocarpus subulatus–A highly stress-tolerant brown alga SM Dittami, E Corre, L Brillet-Guéguen, AP Lipinska, N Pontoizeau, M Aite, ... Marine genomics 52, 100740, 2020	31	2020
Hybrid Metabolic Network Completion C Frioux, T Schaub, S Schellhorn, A Siegel, P Wanko International Conference on Logic Programming and Nonmonotonic Reasoning …, 2017	25	2017
Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus D Nègre, M Aite, A Belcour, C Frioux, L Brillet-Guéguen, X Liu, P Bordron, ... Antioxidants 8 (11), 564, 2019	23	2019
The functional microbiome of grapevine throughout plant evolutionary history and lifetime P Fournier, L Pellan, D Barroso-Bergadà, DA Bohan, T Candresse, ... Advances in Ecological Research 67, 27-99, 2022	22	2022
Crystal structure and biochemical characterization of a manganese superoxide dismutase from Chaetomium thermophilum T Haikarainen, C Frioux, LQ Zhnag, DC Li, AC Papageorgiou Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (2), 422-429, 2014	19	2014
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing K Cerk, P Ugalde‐Salas, CG Nedjad, M Lecomte, C Muller, DJ Sherman, ... Microbial Biotechnology 17 (1), e14396, 2024	12	2024
Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks J Laniau, C Frioux, J Nicolas, C Baroukh, MP Cortes, J Got, C Trottier, ... PeerJ 5, e3860, 2017	11	2017
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines E Karimi, E Geslain, A Belcour, C Frioux, M Aïte, A Siegel, E Corre, ... PeerJ 9, e11344, 2021	10	2021
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe A Belcour, J Got, M Aite, L Delage, J Collén, C Frioux, C Leblanc, ... Genome Research 33 (6), 972-987, 2023	9*	2023
Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation H KleinJan, C Frioux, G Califano, M Aite, E Fremy, E Karimi, E Corre, ... Molecular Ecology 32 (3), 703-723, 2023	7	2023
Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host–microbial interactions C Frioux, SM Dittami, A Siegel Biochemical Society Transactions 48 (3), 901-913, 2020	5	2020

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