| Strategic and practical guidelines for successful structured illumination microscopy J Demmerle, C Innocent, AJ North, G Ball, M Müller, E Miron, A Matsuda, ... Nature protocols 12 (5), 988-1010, 2017 | 342 | 2017 |
| RNA promotes the formation of spatial compartments in the nucleus SA Quinodoz, JW Jachowicz, P Bhat, N Ollikainen, AK Banerjee, ... Cell 184 (23), 5775-5790. e30, 2021 | 311 | 2021 |
| The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments T Cremer, M Cremer, B Hübner, H Strickfaden, D Smeets, J Popken, ... FEBS letters 589 (20), 2931-2943, 2015 | 258 | 2015 |
| Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system T Anton, S Bultmann, H Leonhardt, Y Markaki Nucleus 5 (2), 163-172, 2014 | 197 | 2014 |
| Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci D Smeets, Y Markaki, VJ Schmid, F Kraus, A Tattermusch, A Cerase, ... Epigenetics & chromatin 7, 1-27, 2014 | 193 | 2014 |
| Functional nuclear organization of transcription and DNA replication a topographical marriage between chromatin domains and the interchromatin compartment Y Markaki, M Gunkel, L Schermelleh, S Beichmanis, J Neumann, ... Cold Spring Harbor symposia on quantitative biology 75, 475-492, 2010 | 179 | 2010 |
| A protein assembly mediates Xist localization and gene silencing A Pandya-Jones, Y Markaki, J Serizay, T Chitiashvili, WR Mancia Leon, ... Nature 587 (7832), 145-151, 2020 | 177 | 2020 |
| The potential of 3D‐FISH and super‐resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined … Y Markaki, D Smeets, S Fiedler, VJ Schmid, L Schermelleh, T Cremer, ... Bioessays 34 (5), 412-426, 2012 | 171 | 2012 |
| 4D Visualization of replication foci in mammalian cells corresponding to individual replicons VO Chagin, CS Casas-Delucchi, M Reinhart, L Schermelleh, Y Markaki, ... Nature communications 7 (1), 11231, 2016 | 149 | 2016 |
| Mitotic phosphorylation of histone H3 at threonine 3 H Polioudaki, Y Markaki, N Kourmouli, G Dialynas, PA Theodoropoulos, ... FEBS letters 560 (1-3), 39-44, 2004 | 135 | 2004 |
| Xist nucleates local protein gradients to propagate silencing across the X chromosome Y Markaki, JG Chong, Y Wang, EC Jacobson, C Luong, SYX Tan, ... Cell 184 (25), 6174-6192. e32, 2021 | 118 | 2021 |
| LaminA/C regulates epigenetic and chromatin architecture changes upon aging of hematopoietic stem cells A Grigoryan, N Guidi, K Senger, T Liehr, K Soller, G Marka, A Vollmer, ... Genome biology 19, 1-21, 2018 | 85 | 2018 |
| Quantitative 3D structured illumination microscopy of nuclear structures F Kraus, E Miron, J Demmerle, T Chitiashvili, A Budco, Q Alle, A Matsuda, ... Nature protocols 12 (5), 1011-1028, 2017 | 85 | 2017 |
| Phosphorylation of histone H3 at Thr3 is part of a combinatorial pattern that marks and configures mitotic chromatin Y Markaki, A Christogianni, AS Politou, SD Georgatos Journal of cell science 122 (16), 2809-2819, 2009 | 66 | 2009 |
| Multivalent binding of PWWP2A to H2A. Z regulates mitosis and neural crest differentiation S Pünzeler, S Link, G Wagner, EC Keilhauer, N Kronbeck, RMM Spitzer, ... The EMBO journal 36 (15), 2263-2279, 2017 | 57 | 2017 |
| Remodeling of nuclear landscapes during human myelopoietic cell differentiation maintains co-aligned active and inactive nuclear compartments B Hübner, M Lomiento, F Mammoli, D Illner, Y Markaki, S Ferrari, ... Epigenetics & chromatin 8, 1-21, 2015 | 54 | 2015 |
| A modular open platform for systematic functional studies under physiological conditions CB Mulholland, M Smets, E Schmidtmann, S Leidescher, Y Markaki, ... Nucleic acids research 43 (17), e112-e112, 2015 | 53 | 2015 |
| Fluorescence in situ hybridization applications for super-resolution 3D structured illumination microscopy Y Markaki, D Smeets, M Cremer, L Schermelleh Nanoimaging: Methods and Protocols, 43-64, 2012 | 53 | 2012 |
| Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters M Cremer, VJ Schmid, F Kraus, Y Markaki, I Hellmann, A Maiser, ... Epigenetics & chromatin 10, 1-17, 2017 | 50 | 2017 |
| Gene-rich chromosomal regions are preferentially localized in the lamin B deficient nuclear blebs of atypical progeria cells K Bercht Pfleghaar, P Taimen, V Butin-Israeli, T Shimi, S Langer-Freitag, ... Nucleus 6 (1), 66-76, 2015 | 41 | 2015 |
