Tarcisio Mendes De Farias

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Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerifisert e-postadresse på unil.ch
Ana RoxinMaître de conférences HDR, LIB (Laboratoire d'Informatique de Bourgogne) EA7534Verifisert e-postadresse på u-bourgogne.fr
Christophe NicolleUniversité de Bourgogne - CIAD - UMR 7533Verifisert e-postadresse på u-bourgogne.fr
Ana Claudia SimaCo-Team Lead, Knowledge Representation Unit at SIB Swiss Institute of BioinformaticsVerifisert e-postadresse på sib.swiss
Kurt StockingerProfessor of Computer Science, Zurich University of Applied SciencesVerifisert e-postadresse på zhaw.ch
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerifisert e-postadresse på unil.ch
Natasha GloverSwiss Institute of Bioinformatics, University of LausanneVerifisert e-postadresse på unil.ch
Adrian AltenhoffSIB Swiss Institute of Bioinformatics & ETH ZurichVerifisert e-postadresse på inf.ethz.ch
Frederic B. BastianAssociate Director, Evolutionary Bioinformatics Group, SIB Swiss Institute of BioinformaticsVerifisert e-postadresse på sib.swiss
Pieter PauwelsAssociate Professor, Eindhoven University of TechnologyVerifisert e-postadresse på tue.nl
Jos De RooGhent University - imecVerifisert e-postadresse på ugent.be
Jakob BeetzProfessor, RWTH University AachenVerifisert e-postadresse på caad.arch.rwth-aachen.de
Chi ZhangEindhoven University of TechnologyVerifisert e-postadresse på tue.nl
Davide LantiAssistant Professor of Computer Science, Free University of Bozen-BolzanoVerifisert e-postadresse på unibz.it
Diego CalvaneseProf. of Computer Science, KRDB, Free Univ. of Bozen-Bolzano; Wallenberg Visiting Prof., Umeå Univ.Verifisert e-postadresse på unibz.it
Vincent EmonetData science developer, Swiss Institute of BioinformaticsVerifisert e-postadresse på sib.swiss

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Tarcisio Mendes De Farias

Co-Team Lead, Knowledge Representation Unit at SIB Swiss Institute of Bioinformatics

Verifisert e-postadresse på sib.swiss - Startside

Data management Semantic Web Artificial Intelligence ontology Large Language Model


Tittel Sorter etter sitater Sorter etter år Sorter etter tittel	Sitert av Sitert av	År
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018	246	2018
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ... Nucleic Acids Research, 2020	198	2020
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals FB Bastian, J Roux, A Niknejad, A Comte, SS Fonseca Costa, ... Nucleic acids research 49 (D1), D831-D847, 2021	181	2021
Querying knowledge graphs in natural language S Liang, K Stockinger, TM De Farias, M Anisimova, M Gil Journal of big data 8 (1), 3, 2021	78	2021
A performance benchmark over semantic rule checking approaches in construction industry P Pauwels, TM de Farias, C Zhang, A Roxin, J Beetz, J De Roo, C Nicolle Advanced Engineering Informatics 33, 68-88, 2017	68	2017
IfcWoD, Semantically Adapting IFC Model Relations into OWL Properties TM de Farias, A Roxin, C Nicolle Proceedings of the 32nd CIB W78 Conference on Information Technology in …, 2015	62*	2015
Enabling semantic queries across federated bioinformatics databases AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ... Database 2019, baz106, 2019	53	2019
A rule-based methodology to extract building model views TM Farias, A Roxin, C Nicolle Automation in Construction 92, 214-229, 2018	44	2018
SWRL Rule-selection Methodology for Ontology Interoperability TM De Farias, A Roxin, C Nicolle Data & Knowledge Engineering, 2015	42	2015
Cobieowl, an owl ontology based on cobie standard MT Farias, A Roxin, C Nicolle On the Move to Meaningful Internet Systems: OTM 2015 Conferences …, 2015	40*	2015
Ten years of collaborative progress in the quest for orthologs B Linard, I Ebersberger, SE McGlynn, N Glover, T Mochizuki, M Patricio, ... Molecular biology and evolution 38 (8), 3033-3045, 2021	36	2021
A rule based system for semantical enrichment of building information exchange TM De Farias, A Roxin, C Nicolle CEUR Proceedings of RuleML2014, the 8th International Web Rule Symposium …, 2014	28	2014
FOWLA, a federated architecture for ontologies TM Farias, A Roxin, C Nicolle Rule Technologies: Foundations, Tools, and Applications: 9th International …, 2015	27	2015
INODE: building an end-to-end data exploration system in practice S Amer-Yahia, G Koutrika, M Braschler, D Calvanese, D Lanti, ... ACM SIGMOD Record 50 (4), 23-29, 2022	23	2022
Semantic integration and enrichment of heterogeneous biological databases AC Sima, K Stockinger, TM de Farias, M Gil Evolutionary genomics: statistical and computational methods, 655-690, 2019	21	2019
Querying and reasoning over large scale building data sets: an outline of a performance benchmark P Pauwels, TM De Farias, C Zhang, A Roxin, J Beetz, J De Roo, C Nicolle Proceedings of the International Workshop on Semantic Big Data, 1-6, 2016	20	2016
Accessing scientific data through knowledge graphs with Ontop D Calvanese, D Lanti, TM De Farias, A Mosca, G Xiao Patterns 2 (10), 2021	18*	2021
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph JC Rangel, TM de Farias, AC Sima, N Kobayashi SWAT4HCLS, 2024	14	2024
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data AC Sima, TM de Farias, M Anisimova, C Dessimoz, M Robinson-Rechavi, ... In 33rd International Conference on Scientific and Statistical Database …, 2021	14	2021
Semantic web technologies for implementing cost-effective and interoperable building information modeling TM De Farias, AM Roxin, C Nicolle Proceedings of the 14th International Conference on Informatics in Economy …, 2015	12	2015

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