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Pilar Cossio
Pilar Cossio
Flatiron Institute
Verifisert e-postadresse på flatironinstitute.org
Tittel
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Exponential consensus ranking improves the outcome in docking and receptor ensemble docking
K Palacio-Rodríguez, I Lans, CN Cavasotto, P Cossio
Scientific reports 9 (1), 5142, 2019
1642019
The molecular mechanism of substrate engagement and immunosuppressant inhibition of calcineurin
S Grigoriu, R Bond, P Cossio, JA Chen, N Ly, G Hummer, R Page, ...
PLoS biology 11 (2), e1001492, 2013
1632013
On artifacts in single-molecule force spectroscopy
P Cossio, G Hummer, A Szabo
Proceedings of the National Academy of Sciences 112 (46), 14248-14253, 2015
1042015
Exploring the universe of protein structures beyond the Protein Data Bank
P Cossio, A Trovato, F Pietrucci, F Seno, A Maritan, A Laio
PLoS computational biology 6 (11), e1000957, 2010
752010
Bayesian analysis of individual electron microscopy images: Towards structures of dynamic and heterogeneous biomolecular assemblies
P Cossio, G Hummer
Journal of structural biology 184 (3), 427-437, 2013
692013
Protein folding and ligand-enzyme binding from bias-exchange metadynamics simulations
F Baftizadeh, P Cossio, F Pietrucci, A Laio
Current Physical Chemistry 2 (1), 79-91, 2012
652012
Transition paths in single-molecule force spectroscopy
P Cossio, G Hummer, A Szabo
The Journal of chemical physics 148 (12), 2018
592018
A simple and efficient statistical potential for scoring ensembles of protein structures
P Cossio, D Granata, A Laio, F Seno, A Trovato
Scientific Reports 2 (1), 351, 2012
582012
A Bayesian approach to extracting free-energy profiles from cryo-electron microscopy experiments
J Giraldo-Barreto, S Ortiz, EH Thiede, K Palacio-Rodriguez, B Carpenter, ...
Scientific reports 11 (1), 13657, 2021
522021
Optimizing the performance of bias-exchange metadynamics: folding a 48-residue LysM domain using a coarse-grained model
P Cossio, F Marinelli, A Laio, F Pietrucci
The Journal of Physical Chemistry B 114 (9), 3259-3265, 2010
462010
Which similarity measure is better for analyzing protein structures in a molecular dynamics trajectory?
P Cossio, A Laio, F Pietrucci
Physical Chemistry Chemical Physics 13 (22), 10421-10425, 2011
452011
Predicting the affinity of peptides to major histocompatibility complex class II by scoring molecular dynamics simulations
R Ochoa, A Laio, P Cossio
Journal of chemical information and modeling 59 (8), 3464-3473, 2019
402019
Conformational heterogeneity and probability distributions from single-particle cryo-electron microscopy
WS Tang, ED Zhong, SM Hanson, EH Thiede, P Cossio
Current Opinion in Structural Biology 81, 102626, 2023
392023
BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images
P Cossio, D Rohr, F Baruffa, M Rampp, V Lindenstruth, G Hummer
Computer Physics Communications 210, 163-171, 2017
382017
Kinetic ductility and force-spike resistance of proteins from single-molecule force spectroscopy
P Cossio, G Hummer, A Szabo
Biophysical journal 111 (4), 832-840, 2016
362016
Ensemble reweighting using cryo-EM particle images
WS Tang, D Silva-Sánchez, J Giraldo-Barreto, B Carpenter, SM Hanson, ...
The Journal of Physical Chemistry B 127 (24), 5410-5421, 2023
332023
Conformations of the Huntingtin N-term in aqueous solution from atomistic simulations
G Rossetti, P Cossio, A Laio, P Carloni
FEBS letters 585 (19), 3086-3089, 2011
322011
Critical behavior of ferromagnetic Ising thin films
P Cossio, J Mazo-Zuluaga, J Restrepo
Physica B: Condensed Matter 384 (1-2), 227-229, 2006
322006
Discovery of antimicrobial compounds targeting bacterial type FAD synthetases
M Sebastián, E Anoz-Carbonell, B Gracia, P Cossio, JA Aínsa, I Lans, ...
Journal of enzyme inhibition and medicinal chemistry 33 (1), 241-254, 2018
292018
Transition rates and efficiency of collective variables from time-dependent biased simulations
K Palacio-Rodriguez, H Vroylandt, LS Stelzl, F Pietrucci, G Hummer, ...
The journal of physical chemistry letters 13 (32), 7490-7496, 2022
262022
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Artikler 1–20