Olin Silander

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Nikki E. FreedUniversity of Auckland, New ZealandVerifisert e-postadresse på auckland.ac.nz
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerifisert e-postadresse på unibas.ch
Martin AckermannMicrobial Systems Ecology, Eawag, ETH Zurich and EPFL, SwitzerlandVerifisert e-postadresse på env.ethz.ch
Markéta Vlková-ŽlebkováPostdoc, Max Planck Institute for Biology TübingenVerifisert e-postadresse på tuebingen.mpg.de
Lin ChaoProfessor of Ecology, Behavior and Evolution, UCSDVerifisert e-postadresse på ucsd.edu
William S. PearmanUniversity of AucklandVerifisert e-postadresse på auckland.ac.nz
Olivier TenaillonInstitut Cochin, Université Paris Cité, Inserm, CNRS , Professor Ecole PolytechniqueVerifisert e-postadresse på inserm.fr
Alon ZaslaverThe Hebrew UniversityVerifisert e-postadresse på mail.huji.ac.il
Paul B RaineyMax-Planck Institute for Evolutionary Biology, Plön, Germany & ESPCI, Paris, FranceVerifisert e-postadresse på evolbio.mpg.de
Frederic BertelsMax Planck Institute for Evolutionary BiologyVerifisert e-postadresse på evolbio.mpg.de
Mikhail PachkovUniversity of Basel, Swiss Institute of BioinformaticsVerifisert e-postadresse på unibas.ch
Georgia BreckellResearch Scientist at MPI, NZVerifisert e-postadresse på mpi.govt.nz
James DaleProfessor in Zoology, Massey University, New ZealandVerifisert e-postadresse på massey.ac.nz
Florian JugFondazione Human TechnopoleVerifisert e-postadresse på fht.org
Thomas PfohlUniversity of FreiburgVerifisert e-postadresse på physik.uni-freiburg.de
Gene MyersMax-Planck Institute for Molecular Cell Biology & GeneticsVerifisert e-postadresse på mpi-cbg.de
Rachel V PurcellUniversity of Otago, ChristchurchVerifisert e-postadresse på otago.ac.nz
Paul E. TurnerRachel Carson Professor of Ecology and Evolutionary Biology, Yale UniversityVerifisert e-postadresse på yale.edu
Daniel M WeinreichBrown UniversityVerifisert e-postadresse på brown.edu
Kevin M. WrightActio BiosciencesVerifisert e-postadresse på actiobio.com

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Olin Silander

Senior Research Fellow, Liggins Institute, University of Auckland

Verifisert e-postadresse på auckland.ac.nz - Startside

microbial evolution human genomics gene expression microbial diversity


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Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	483	2014
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding NE Freed, M Vlková, MB Faisal, OK Silander Biology Methods and Protocols 5 (1), bpaa014, 2020	273	2020
Understanding the evolutionary fate of finite populations: the dynamics of mutational effects OK Silander, O Tenaillon, L Chao PLoS biology 5 (4), e94, 2007	217	2007
A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli OK Silander, N Nikolic, A Zaslaver, A Bren, U Kikoin, Ilya, Alon, ... PLoS Genetics, 2012	213	2012
Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 121, 2021	204	2021
Epistasis between deleterious mutations and the evolution of recombination RD Kouyos, OK Silander, S Bonhoeffer Trends in ecology & evolution 22 (6), 308-315, 2007	173	2007
Alterations of the X-linked lymphoproliferative disease geneSH2D1A in common variable immunodeficiency syndrome M Morra, O Silander, S Calpe, M Choi, H Oettgen, L Myers, A Etzioni, ... Blood, The Journal of the American Society of Hematology 98 (5), 1321-1325, 2001	138	2001
Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software M Kaiser, F Jug, T Julou, S Deshpande, T Pfohl, OK Silander, G Myers, ... Nature communications 9 (1), 212, 2018	134	2018
Expression noise facilitates the evolution of gene regulation L Wolf, OK Silander, E van Nimwegen eLife 4, e05856, 2015	133	2015
Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads WS Pearman, NE Freed, OK Silander BMC Bioinformatics 21, 1-15, 2020	118	2020
Characterization of SH2D1A missense mutations identified in X-linked lymphoproliferative disease patients M Morra, M Simarro-Grande, M Martin, ASI Chen, A Lanyi, O Silander, ... Journal of Biological Chemistry 276 (39), 36809-36816, 2001	110	2001
A simple screen to identify promoters conferring high levels of phenotypic noise NE Freed, OK Silander, B Stecher, A Böhm, WD Hardt, M Ackermann PLoS genetics 4 (12), e1000307, 2008	102	2008
Patterns of evolutionary conservation of essential genes correlate with their compensability T Bergmiller, M Ackermann, OK Silander PLoS genetics 8 (6), e1002803, 2012	98	2012
Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli N Hofsteenge, E van Nimwegen, OK Silander BMC microbiology 13, 1-11, 2013	97	2013
The predictability of molecular evolution during functional innovation D Blank, L Wolf, M Ackermann, OK Silander Proceedings of the National Academy of Sciences 111 (8), 3044-3049, 2014	88	2014
Quantifying organismal complexity using a population genetic approach O Tenaillon, OK Silander, JP Uzan, L Chao PloS one 2 (2), e217, 2007	86	2007
Widespread genetic exchange among terrestrial bacteriophages OK Silander, DM Weinreich, KM Wright, KJ O'Keefe, CU Rang, PE Turner, ... Proceedings of the National Academy of Sciences 102 (52), 19009-19014, 2005	74	2005
Opposite effects of KCTD subunit domains on GABAB receptor-mediated desensitization R Seddik, SP Jungblut, OK Silander, M Rajalu, T Fritzius, V Besseyrias, ... Journal of Biological Chemistry 287 (47), 39869-39877, 2012	59	2012
Use of genomics to track coronavirus disease outbreaks, New Zealand JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ... Emerging Infectious Diseases 27 (5), 1317, 2021	44	2021
Combining Shigella Tn-seq data with Gold-standard E. coli Gene Deletion Data Suggests Rare Transitions between Essential and Non-essential Gene Functionality NE Freed, D Bumann, O Silander BMC Microbiology 16, 203, 2016	27	2016

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