Zachary McDargh

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Markus DesernoProfessor of Physics, Carnegie Mellon UniversityVerifisert e-postadresse på andrew.cmu.edu
Sathish ThiyagarajanPostdoctoral Scientist at Earlham InstituteVerifisert e-postadresse på earlham.ac.uk
Rui SuDepartment of Chemical Engineering, Columbia UniversityVerifisert e-postadresse på columbia.edu
Erdem KaratekinYale UniversityVerifisert e-postadresse på yale.edu
Jemal GuvenNational University of Mexico (UNAM)Verifisert e-postadresse på nucleares.unam.mx
Pablo Vázquez-MontejoCONAHCYT - Facultad de Matemáticas, Universidad Autónoma de YucatánVerifisert e-postadresse på correo.uady.mx
Anirban PolleyShanmugha Arts, Science, Technology & Research Academy (SASTRA University), Tamil NaduVerifisert e-postadresse på tut.fi
Shuyuan WangDepartment of Physics, Columbia UniversityVerifisert e-postadresse på Columbia.edu
Albert JinScientist at NIHVerifisert e-postadresse på mail.nih.gov
Gianvito ArpinoPh.D. in Medical Science, Electron microscopy expertVerifisert e-postadresse på nih.gov
Ling-Gang WuNIHVerifisert e-postadresse på ninds.nih.gov
Wonchul ShinNational Institutes of HealthVerifisert e-postadresse på nih.gov
xiaoli guoNational Institute of Neurological Disorders and Stroke, NIHVerifisert e-postadresse på nih.gov
Lihao GENINDSVerifisert e-postadresse på nih.gov
Nadiv DharanPostdoctoral Research Scientist at Columbia UniversityVerifisert e-postadresse på columbia.edu
JA IzaguirreNotre DameVerifisert e-postadresse på nd.edu
Huafeng XuAtommap CorporationVerifisert e-postadresse på atommapper.com
James RothmanYale UniversityVerifisert e-postadresse på yale.edu
Feng LiYale UnversityVerifisert e-postadresse på yale.edu
Dong AnPostdoc at University of MiamiVerifisert e-postadresse på columbia.edu

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Zachary McDargh

AtomMap

Verifisert e-postadresse på atommapper.com

Drug Discovery Machine Learning Biophysics Membrane remodeling Coarse Graining


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Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ... Nature communications 13 (1), 5884, 2022	66*	2022
The role of scaffold reshaping and disassembly in dynamin driven membrane fission M Pannuzzo, ZA McDargh, M Deserno Elife 7, e39441, 2018	65	2018
Unlocking de novo antibody design with generative artificial intelligence A Shanehsazzadeh, S Bachas, M McPartlon, G Kasun, JM Sutton, ... BioRxiv, 2023.01. 08.523187, 2023	57	2023
Vesicle shrinking and enlargement play opposing roles in the release of exocytotic contents W Shin, G Arpino, S Thiyagarajan, R Su, L Ge, Z McDargh, X Guo, L Wei, ... Cell reports 30 (2), 421-431. e7, 2020	45	2020
Curvature softening and negative compressibility of gel-phase lipid membranes P Diggins IV, ZA McDargh, M Deserno Journal of the American Chemical Society 137 (40), 12752-12755, 2015	37	2015
The neuronal calcium sensor Synaptotagmin-1 and SNARE proteins cooperate to dilate fusion pores Z Wu, N Dharan, ZA McDargh, S Thiyagarajan, B O'Shaughnessy, ... Elife 10, 2021	35	2021
Constriction by dynamin: Elasticity versus adhesion ZA McDargh, P Vázquez-Montejo, J Guven, M Deserno Biophysical journal 111 (11), 2470-2480, 2016	27	2016
SNARE‐mediated membrane fusion is a two‐stage process driven by entropic forces ZA McDargh, A Polley, B O'Shaughnessy FEBS letters 592 (21), 3504-3515, 2018	24	2018
Synaptotagmin rings as high-sensitivity regulators of synaptic vesicle docking and fusion J Zhu, ZA McDargh, F Li, SS Krishnakumar, JE Rothman, ... Proceedings of the National Academy of Sciences 119 (38), e2208337119, 2022	19	2022
Cylindrical confinement of semiflexible polymers P Vázquez-Montejo, Z McDargh, M Deserno, J Guven Physical Review E 91 (6), 063203, 2015	18	2015
Myosins generate contractile force and maintain organization in the cytokinetic contractile ring BOS Zachary McDargh, Shuyuan Wang, Harvey F. Chin, Sathish Thiyagarajan ... bioRxiv, 2021	11	2021
Dynamin's helical geometry does not destabilize membranes during fission ZA McDargh, M Deserno Traffic 19 (5), 328-335, 2018	11	2018
Molecular-dynamics approach for determining the vacancy heat of transport Z McDargh, PK Schelling Computational materials science 50 (8), 2363-2370, 2011	10	2011
Molecular latent space simulators for distributed and multimolecular trajectories MS Jones, ZA McDargh, RP Wiewiora, JA Izaguirre, H Xu, AL Ferguson The Journal of Physical Chemistry A 127 (25), 5470-5490, 2023	7	2023
First integrals of the axisymmetric shape equation of lipid membranes YH Zhang, Z McDargh, ZC Tu Chinese Physics B 27 (3), 038704, 2018	6	2018
Actin turnover protects the cytokinetic contractile ring from structural instability Z McDargh, T Zhu, H Zhu, B O'Shaughnessy Journal of Cell Science 136 (5), jcs259969, 2023	4	2023
Coupling of Ca²⁺-triggered unclamping and membrane fusion during neurotransmitter release ZA McDargh, A Polley, J Zeng, B O’Shaughnessy bioRxiv, 2021.06. 16.448753, 2021	3	2021
Computational Modeling of Ternary Complex Formation and Targeted Protein Degradation Mediated by Molecular Glues JA Izaguirre, Y Wu, Z McDargh, T Palpant, AM Razavi, F Trovato, C Koh, ... bioRxiv, 2025.01. 13.632817, 2025	1	2025
Membrane fusion pores belong to three families R Su, ZA McDargh, S Wang, B O’Shaughnessy Biophysical Journal 121 (3), 227a, 2022	1*	2022
Why are SNARE complexes rod-shaped? J Zeng, ZA McDargh, D An, B O'Shaughnessy Biophysical Journal 121 (3), 73a, 2022	1*	2022

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