| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 36068 | 2010 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16237 | 2019 |
| Linking long-term dietary patterns with gut microbial enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011 | 7309 | 2011 |
| PyNAST: a flexible tool for aligning sequences to a template alignment JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ... Bioinformatics 26 (2), 266-267, 2010 | 3887 | 2010 |
| Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5, 1-18, 2017 | 1824 | 2017 |
| Topographical continuity of bacterial populations in the healthy human respiratory tract ES Charlson, K Bittinger, AR Haas, AS Fitzgerald, I Frank, A Yadav, ... American journal of respiratory and critical care medicine 184 (8), 957-963, 2011 | 1246 | 2011 |
| Association between breast milk bacterial communities and establishment and development of the infant gut microbiome PS Pannaraj, F Li, C Cerini, JM Bender, S Yang, A Rollie, H Adisetiyo, ... JAMA pediatrics 171 (7), 647-654, 2017 | 1095 | 2017 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1008 | 2018 |
| Associating microbiome composition with environmental covariates using generalized UniFrac distances J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ... Bioinformatics 28 (16), 2106-2113, 2012 | 1001 | 2012 |
| Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn’s disease JD Lewis, EZ Chen, RN Baldassano, AR Otley, AM Griffiths, D Lee, ... Cell host & microbe 18 (4), 489-500, 2015 | 877 | 2015 |
| Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota L Albenberg, TV Esipova, CP Judge, K Bittinger, J Chen, A Laughlin, ... Gastroenterology 147 (5), 1055-1063. e8, 2014 | 865 | 2014 |
| Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production GD Wu, C Compher, EZ Chen, SA Smith, RD Shah, K Bittinger, ... Gut 65 (1), 63-72, 2016 | 576 | 2016 |
| Dysbiosis-induced secondary bile acid deficiency promotes intestinal inflammation SR Sinha, Y Haileselassie, LP Nguyen, C Tropini, M Wang, LS Becker, ... Cell host & microbe 27 (4), 659-670. e5, 2020 | 556 | 2020 |
| Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota AP Lauder, AM Roche, S Sherrill-Mix, A Bailey, AL Laughlin, K Bittinger, ... Microbiome 4, 1-11, 2016 | 547 | 2016 |
| Optimizing methods and dodging pitfalls in microbiome research D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, A Lauder, ... Microbiome 5, 1-14, 2017 | 508 | 2017 |
| Disordered microbial communities in the upper respiratory tract of cigarette smokers ES Charlson, J Chen, R Custers-Allen, K Bittinger, H Li, R Sinha, J Hwang, ... PloS one 5 (12), e15216, 2010 | 475 | 2010 |
| Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags GD Wu, JD Lewis, C Hoffmann, YY Chen, R Knight, K Bittinger, J Hwang, ... BMC microbiology 10, 1-14, 2010 | 467 | 2010 |
| Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA BJ Kelly, R Gross, K Bittinger, S Sherrill-Mix, JD Lewis, RG Collman, ... Bioinformatics 31 (15), 2461-2468, 2015 | 396 | 2015 |
| Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant ES Charlson, JM Diamond, K Bittinger, AS Fitzgerald, A Yadav, AR Haas, ... American journal of respiratory and critical care medicine 186 (6), 536-545, 2012 | 362 | 2012 |
| Diabetes enhances IL-17 expression and alters the oral microbiome to increase its pathogenicity E Xiao, M Mattos, GHA Vieira, S Chen, JD Corrêa, Y Wu, ML Albiero, ... Cell host & microbe 22 (1), 120-128. e4, 2017 | 358 | 2017 |
