Boian S. Alexandrov

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Kim O. RasmussenTheoretical Division, Los Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Anny UshevaProfessor (associate) of SurgeryVerifisert e-postadresse på brown.edu
Manish BhattaraiScientist at Los Alamos National Laboratory,Verifisert e-postadresse på lanl.gov
Ludmil B. AlexandrovProfessor, University of California San DiegoVerifisert e-postadresse på ucsd.edu
Erik SkauLos Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Maksim E. ErenLos Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Valentin StanevUniversity of Maryland, College ParkVerifisert e-postadresse på umd.edu
Vladimir M. GelevSofia UniversityVerifisert e-postadresse på chem.uni-sofia.bg
Daniel O'MalleyLos Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Hristo DjidjevScientist at IICT, Bulgarian Academy of Sciences and Los Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Duc P. TruongLos Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Raviteja VangaraUniversity of California, San DiegoVerifisert e-postadresse på health.ucsd.edu
Gopinath Chennupati (గోపినాథ్ చె...Applied Scientist, AmazonVerifisert e-postadresse på amazon.com
Charles NicholasUMBCVerifisert e-postadresse på umbc.edu
Peter B LittlewoodCambridge Chicago StAndrewsVerifisert e-postadresse på uchicago.edu
Hou-Tong ChenLos Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Jennifer S. MartinezDirector, Center for Materials Interfaces in Research and Applications ¡MIRA!Verifisert e-postadresse på nau.edu
George RodriguezLos Alamos National LaboratoryVerifisert e-postadresse på lanl.gov
Derek DeSantisLos Alamos National LabVerifisert e-postadresse på lanl.gov
Amarda ShehuProfessor of Computer Science, George Mason UniversityVerifisert e-postadresse på gmu.edu

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Boian S. Alexandrov

Theoretical Division, Los Alamos National Lab

Verifisert e-postadresse på lanl.gov - Startside

Pattern recognition Nonnegative Factorization DNA dynamics


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Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ... Cell genomics 2 (11), 2022	260	2022
DNA breathing dynamics in the presence of a terahertz field BS Alexandrov, V Gelev, AR Bishop, A Usheva, KØ Rasmussen Physics Letters A 374 (10), 1214-1217, 2010	249	2010
Mammalian stem cells reprogramming in response to terahertz radiation J Bock, Y Fukuyo, S Kang, ML Phipps, LB Alexandrov, KØ Rasmussen, ... PloS one 5 (12), e15806, 2010	172	2010
Nonnegative/binary matrix factorization with a d-wave quantum annealer D O’Malley, VV Vesselinov, BS Alexandrov, LB Alexandrov PloS one 13 (12), e0206653, 2018	152	2018
Specificity and heterogeneity of terahertz radiation effect on gene expression in mouse mesenchymal stem cells BS Alexandrov, ML Phipps, LB Alexandrov, LG Booshehri, A Erat, ... Scientific reports 3 (1), 1184, 2013	130	2013
A rare functional noncoding variant at the GWAS-implicated MIR137/MIR2682 locus might confer risk to schizophrenia and bipolar disorder J Duan, J Shi, A Fiorentino, C Leites, X Chen, W Moy, J Chen, ... The American Journal of Human Genetics 95 (6), 744-753, 2014	118	2014
Non-thermal effects of terahertz radiation on gene expression in mouse stem cells BS Alexandrov, KØ Rasmussen, AR Bishop, A Usheva, LB Alexandrov, ... Biomedical Optics Express 2 (9), 2679-2689, 2011	106	2011
Unsupervised Phase Mapping of X-ray Diffraction Data by Nonnegative Matrix Factorization Integrated with Custom Clustering ITBSA Valentin Stanev, Velimir V. Vesselinov, A. Gilad Kusne, Graham Antoszewski npj Computational Materials 4 (43), 2018	103	2018
A nonlinear dynamic model of DNA with a sequence-dependent stacking term BS Alexandrov, V Gelev, Y Monisova, LB Alexandrov, AR Bishop, ... Nucleic Acids Research 37 (7), 2405-2410, 2009	93	2009
DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation BS Alexandrov, V Gelev, SW Yoo, LB Alexandrov, Y Fukuyo, AR Bishop, ... Nucleic acids research 38 (6), 1790-1795, 2010	91	2010
Temperature behavior of NaI (Tl) scintillation detectors KD Ianakiev, BS Alexandrov, PB Littlewood, MC Browne Nuclear Instruments and Methods in Physics Research Section A: Accelerators …, 2009	90	2009
Contaminant source identification using semi-supervised machine learning VV Vesselinov, BS Alexandrov, D O’Malley Journal of contaminant hydrology 212, 134-142, 2018	77	2018
Blind source separation for groundwater pressure analysis based on nonnegative matrix factorization BS Alexandrov, VV Vesselinov Water Resources Research 50 (9), 7332-7347, 2014	65	2014
Bubble statistics and dynamics in double-stranded DNA BS Alexandrov, LT Wille, KØ Rasmussen, AR Bishop, KB Blagoev Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 74 (5 …, 2006	63	2006
Toward a detailed description of the thermally induced dynamics of the core promoter BS Alexandrov, V Gelev, SW Yoo, AR Bishop, KØ Rasmussen, A Usheva PLoS computational biology 5 (3), e1000313, 2009	56	2009
DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells BS Alexandrov, Y Fukuyo, M Lange, N Horikoshi, V Gelev, ... Nucleic acids research 40 (20), 10116-10123, 2012	54	2012
Unsupervised machine learning based on non-negative tensor factorization for analyzing reactive-mixing VV Vesselinov, MK Mudunuru, S Karra, D O'Malley, BS Alexandrov Journal of Computational Physics 395, 85-104, 2019	51	2019
Pre-melting dynamics of DNA and its relation to specific functions B Alexandrov, NK Voulgarakis, KØ Rasmussen, A Usheva, AR Bishop Journal of Physics: Condensed Matter 21 (3), 034107, 2008	46	2008
Ultra-violet light induced changes in DNA dynamics may enhance TT-dimer recognition KB Blagoev, BS Alexandrov, EH Goodwin, AR Bishop DNA repair 5 (7), 863-867, 2006	45	2006
Feigenbaum cascade of discrete breathers in a model of DNA P Maniadis, BS Alexandrov, AR Bishop, KØ Rasmussen Physical Review E 83 (1), 011904, 2011	43	2011

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