David Koslicki

Sitert av

	Alle	Siden 2020
Sitater	2850	2280
h-indeks	26	24
i10-indeks	35	31

580

290

145

435

20142015201620172018201920202021202220232024202530 37 52 82 137 205 282 308 468 545 564 111

Offentlig tilgang

Vis alle

37 artikler

1 artikkel

tilgjengelige

ikke tilgjengelige

Basert på finansieringsmandater

Medforfattere

Serghei MangulAssistant Professor at USCVerifisert e-postadresse på usc.edu
Eleazar EskinUniversity of California, Los AngelesVerifisert e-postadresse på cs.ucla.edu
Simon FoucartProfessor of Mathematics, Texas A&M UniversityVerifisert e-postadresse på tamu.edu
Gail RosenProfessor of ECE, Drexel UniversityVerifisert e-postadresse på ece.drexel.edu
Roel A. OphoffProfessor of Psychiatry and Human Genetics, University of California Los AngelesVerifisert e-postadresse på ucla.edu
Anil Ori, PhDDepartment of Psychiatry, Amsterdam UMC, the NetherlandsVerifisert e-postadresse på amsterdamumc.nl
Willem M de VosProfessor @ Microbiology Wageningen Netherlands @Helsinki FinlandVerifisert e-postadresse på wur.nl
Loes Olde LoohuisAssistant professor at UCLAVerifisert e-postadresse på mednet.ucla.edu
Alice Carolyn McHardyHelmholtz Centre for Infection Research, GermanyVerifisert e-postadresse på helmholtz-hzi.de
Saikat ChatterjeeKTH - Royal Institute of TechnologyVerifisert e-postadresse på kth.se
Mikko VehkaperäNokia Mobile NetworksVerifisert e-postadresse på nokia.com
Christopher Clemens MayerAIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Medical Signal AnalysisVerifisert e-postadresse på ait.ac.at
Martin BachlerResearch Engineer, AIT Austrian Institute of Technology GmbH, Center for Health & BioresourcesVerifisert e-postadresse på ait.ac.at
Daniel FalushShanghai Institute of Immunity and InfectionVerifisert e-postadresse på ips.ac.cn
Alexander SczyrbaForschungszentrum Jülich (IBG-5), Bielefeld University, Centrum for Biotechnology (CeBiTec)Verifisert e-postadresse på fz-juelich.de
Aaron DarlingIndependentVerifisert e-postadresse på illumina.com
Alan WalkerProfessor, Rowett Institute, University of AberdeenVerifisert e-postadresse på abdn.ac.uk
Mark NovakOregon State UniversityVerifisert e-postadresse på oregonstate.edu
Nicolas InnocentiSvipe ABVerifisert e-postadresse på innocenti.se
Mikael SkoglundKTH Royal Institute of TechnologyVerifisert e-postadresse på kth.se

Følg

David Koslicki

Computer Science and Engineering, Biology, Huck Institutes of the Life Sciences, Penn State

Verifisert e-postadresse på psu.edu - Startside

Computational genomics Metagenomics Probability Knowledge Graphs


Tittel Sorter etter sitater Sorter etter år Sorter etter tittel	Sitert av Sitert av	År
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017	824	2017
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	279	2022
Technology dictates algorithms: recent developments in read alignment M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ... Genome biology 22 (1), 249, 2021	142	2021
Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia LMO Loohuis, S Mangul, A Ori, G Jospin, D Koslicki, HT Yang, T Wu, ... Nature Translational Psychiatry 8 (96), 9, 2018	112*	2018
Striped UniFrac: enabling microbiome analysis at unprecedented scale D McDonald, Y Vázquez-Baeza, D Koslicki, J McClelland, N Reeve, Z Xu, ... Nature methods 15 (11), 847-848, 2018	108	2018
Assessing taxonomic metagenome profilers with OPAL F Meyer, A Bremges, P Belmann, S Janssen, AC McHardy, D Koslicki Genome biology 20, 1-10, 2019	98	2019
Sparse recovery by means of nonnegative least squares S Foucart, D Koslicki IEEE Signal Processing Letters 21 (4), 498-502, 2014	81	2014
Topological entropy of DNA sequences D Koslicki Bioinformatics 27 (8), 1061-1067, 2011	75	2011
Metalign: efficient alignment-based metagenomic profiling via containment min hash N LaPierre, M Alser, E Eskin, D Koslicki, S Mangul Genome biology 21, 1-15, 2020	72	2020
Toward a universal biomedical data translator TBDT Consortium Clinical and Translational Science, 1--5, 2018	72*	2018
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022	70	2022
On entropy-based data mining A Holzinger, M Hörtenhuber, C Mayer, M Bachler, S Wassertheurer, ... Interactive Knowledge Discovery and Data Mining in Biomedical Informatics …, 2014	70	2014
MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation D Koslicki, D Falush MSystems 1 (3), 10.1128/msystems. 00020-16, 2016	66	2016
Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers L Irber, PT Brooks, T Reiter, NT Pierce-Ward, MR Hera, D Koslicki, ... BioRxiv, 2022.01. 11.475838, 2022	64	2022
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing D Koslicki, S Foucart, G Rosen Bioinformatics 29 (17), 2096-2102, 2013	62	2013
Improving minhash via the containment index with applications to metagenomic analysis D Koslicki, H Zabeti Applied Mathematics and Computation 354, 206-215, 2019	58	2019
Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit F Meyer, TR Lesker, D Koslicki, A Fritz, A Gurevich, AE Darling, A Sczyrba, ... Nature protocols 16 (4), 1785-1801, 2021	54	2021
WGSQuikr: fast whole-genome shotgun metagenomic classification D Koslicki, S Foucart, G Rosen PloS one 9 (3), e91784, 2014	52	2014
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin BMC genomics 20, 1-10, 2019	42	2019
RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine EC Wood, AK Glen, LG Kvarfordt, F Womack, L Acevedo, TS Yoon, C Ma, ... BMC bioinformatics 23 (1), 400, 2022	38	2022

Systemet kan ikke utføre handlingen. Prøv på nytt senere.

Artikler 1–20

Sitater per år

Duplikatsitater

Sammenslåtte sitater

Legg til medforfattereMedforfattere

Følg

Sitert av

Medforfattere