| Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research A Conesa, S Götz, JM García-Gómez, J Terol, M Talón, M Robles Bioinformatics 21 (18), 3674-3676, 2005 | 11948 | 2005 |
| High-throughput functional annotation and data mining with the Blast2GO suite S Götz, JM García-Gómez, J Terol, TD Williams, SH Nagaraj, MJ Nueda, ... Nucleic acids research 36 (10), 3420-3435, 2008 | 4317 | 2008 |
| A survey of best practices for RNA-seq data analysis A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ... Genome biology 17, 1-19, 2016 | 3265 | 2016 |
| Blast2GO: a comprehensive suite for functional analysis in plant genomics A Conesa, S Götz International journal of plant genomics 2008 (1), 619832, 2008 | 2314 | 2008 |
| Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data K Okonechnikov, A Conesa, F García-Alcalde Bioinformatics 32 (2), 292-294, 2016 | 1759 | 2016 |
| Differential expression in RNA-seq: a matter of depth S Tarazona, F García-Alcalde, J Dopazo, A Ferrer, A Conesa Genome research 21 (12), 2213-2223, 2011 | 1692 | 2011 |
| Qualimap: evaluating next-generation sequencing alignment data F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ... Bioinformatics 28 (20), 2678-2679, 2012 | 1048 | 2012 |
| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Nature biotechnology 32 (9), 903-914, 2014 | 873 | 2014 |
| Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package S Tarazona, P Furió-Tarí, D Turrà, AD Pietro, MJ Nueda, A Ferrer, ... Nucleic acids research 43 (21), e140-e140, 2015 | 786 | 2015 |
| Filamentous fungi as cell factories for heterologous protein production PJ Punt, N van Biezen, A Conesa, A Albers, J Mangnus, ... Trends in biotechnology 20 (5), 200-206, 2002 | 603 | 2002 |
| Data integration in the era of omics: current and future challenges D Gomez-Cabrero, I Abugessaisa, D Maier, A Teschendorff, ... BMC systems biology 8, 1-10, 2014 | 502 | 2014 |
| maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments A Conesa, MJ Nueda, A Ferrer, M Talón Bioinformatics 22 (9), 1096-1102, 2006 | 474 | 2006 |
| Initial genomics of the human nucleolus A Németh, A Conesa, J Santoyo-Lopez, I Medina, D Montaner, B Péterfia, ... PLoS genetics 6 (3), e1000889, 2010 | 451 | 2010 |
| SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ... Genome research 28 (3), 396-411, 2018 | 381 | 2018 |
| Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ... Nucleic acids research 38 (suppl_2), W210-W213, 2010 | 367 | 2010 |
| Making sense of big data in health research: towards an EU action plan C Auffray, R Balling, I Barroso, L Bencze, M Benson, J Bergeron, ... Genome medicine 8, 1-13, 2016 | 351 | 2016 |
| The secretion pathway in filamentous fungi: a biotechnological view A Conesa, PJ Punt, N van Luijk, CA van den Hondel Fungal Genetics and Biology 33 (3), 155-171, 2001 | 349 | 2001 |
| Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series MJ Nueda, S Tarazona, A Conesa Bioinformatics 30 (18), 2598-2602, 2014 | 332 | 2014 |
| Effect of COVID-19 pandemic lockdowns on planned cancer surgery for 15 tumour types in 61 countries: an international, prospective, cohort study J Glasbey, A Ademuyiwa, A Adisa, E AlAmeer, AP Arnaud, F Ayasra, ... The Lancet Oncology 22 (11), 1507-1517, 2021 | 268 | 2021 |
| Fungal peroxidases: molecular aspects and applications A Conesa, PJ Punt, CA van den Hondel Journal of Biotechnology 93 (2), 143-158, 2002 | 267 | 2002 |
