Eric E. Allen

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Sheila PodellScripps Institution of OceanographyVerifisert e-postadresse på ucsd.edu
Jillian BANFIELDUniversity of California BerkeleyVerifisert e-postadresse på berkeley.edu
Jeremiah J. Minich, PhDSalkVerifisert e-postadresse på salk.edu
Gene W. TysonProfessor, Centre for Microbiome Research, Queensland University of TechnologyVerifisert e-postadresse på qut.edu.au
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerifisert e-postadresse på ucsd.edu
Paul M RichardsonMicroTrek IncorporatedVerifisert e-postadresse på microtrek.net
Dr. Karla HeidelbergDepartment of Biology, University of Southern CaliforniaVerifisert e-postadresse på usc.edu
Bradley Scott MooreUCSDVerifisert e-postadresse på ucsd.edu
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerifisert e-postadresse på uq.edu.au
Juan A. UgaldeCenter for Bioinformatics and Integrative Biology, Universidad Andres BelloVerifisert e-postadresse på unab.cl
Joanne B. EmersonAssociate Professor, University of California, DavisVerifisert e-postadresse på ucdavis.edu
Vinayak AgarwalAssociate Professor, Chemistry & Biochemistry, Biological Sciences. Georgia TechVerifisert e-postadresse på gatech.edu
Paul JensenScripps Institution of Oceanography, University of California San DiegoVerifisert e-postadresse på ucsd.edu
Priya NarasingaraoScripps Institution of OceanographyVerifisert e-postadresse på ucsd.edu
Andrew E. AllenJ. Craig Venter Institute, Scripps Insitutuon of Oceanography (UCSD)Verifisert e-postadresse på jcvi.org
Jochen J. BrocksProfessor of Geobiology, Research School of Earth Sciences, The Australian National UniversityVerifisert e-postadresse på anu.edu.au
Christine ShulseLos Medanos CollegeVerifisert e-postadresse på lbl.gov
Kevin PennMassachusetts Institute of TechnologyVerifisert e-postadresse på mit.edu
Victor SolovyevVP of Data Science, Auransa Inc.Verifisert e-postadresse på softberry.com
Jonathan BadgerStaff Scientist, National Cancer InstituteVerifisert e-postadresse på nih.gov

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Eric E. Allen

Professor of Marine Microbiology, University of California San Diego

Verifisert e-postadresse på ucsd.edu

Metagenomics Microbial Genetics Bioinformatics


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Community structure and metabolism through reconstruction of microbial genomes from the environment GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ... Nature 428 (6978), 37-43, 2004	2891	2004
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen, LA Amaral-Zettler, ... PLoS biology 12 (6), e1001889, 2014	1062	2014
The genome of a motile marine Synechococcus B Palenik, B Brahamsha, FW Larimer, M Land, L Hauser, P Chain, ... Nature 424 (6952), 1037-1042, 2003	789	2003
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	672	2021
The yeast genome directory AEA Goffeau, R Aert, ML Agostini-Carbone, A Ahmed, M Aigle, ... Nature 387 (6632), 5-6, 1997	533	1997
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species PA Morin, FI Archer, AD Foote, J Vilstrup, EE Allen, P Wade, J Durban, ... Genome research 20 (7), 908-916, 2010	519	2010
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity N Ziemert, S Podell, K Penn, JH Badger, E Allen, PR Jensen PloS one 7 (3), e34064, 2012	496	2012
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ... The ISME journal 6 (1), 81-93, 2012	402	2012
Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource S Sun, J Chen, W Li, I Altintas, A Lin, S Peltier, K Stocks, EE Allen, ... Nucleic acids research 39 (suppl_1), D546-D551, 2010	395	2010
Defining and quantifying the core microbiome: challenges and prospects AT Neu, EE Allen, K Roy Proceedings of the National Academy of Sciences 118 (51), e2104429118, 2021	358	2021
Genome-Directed Isolation of the Key Nitrogen Fixer Leptospirillum ferrodiazotrophum sp. nov. from an Acidophilic Microbial Community GW Tyson, I Lo, BJ Baker, EE Allen, P Hugenholtz, JF Banfield Applied and environmental microbiology 71 (10), 6319-6324, 2005	306	2005
Community genomics in microbial ecology and evolution EE Allen, JF Banfield Nature reviews microbiology 3 (6), 489-498, 2005	299	2005
Biosynthesis of polybrominated aromatic organic compounds by marine bacteria V Agarwal, AA El Gamal, K Yamanaka, D Poth, RD Kersten, M Schorn, ... Nature chemical biology 10 (8), 640-647, 2014	296	2014
Monounsaturated but Not Polyunsaturated Fatty Acids Are Required for Growth of the Deep-Sea BacteriumPhotobacterium profundum SS9 at High Pressure and … EE Allen, D Facciotti, DH Bartlett Applied and Environmental Microbiology 65 (4), 1710-1720, 1999	282	1999
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria I Lo, VJ Denef, NC VerBerkmoes, MB Shah, D Goltsman, G DiBartolo, ... Nature 446 (7135), 537-541, 2007	266	2007
Lineages of acidophilic archaea revealed by community genomic analysis BJ Baker, GW Tyson, RI Webb, J Flanagan, P Hugenholtz, EE Allen, ... Science 314 (5807), 1933-1935, 2006	248	2006
Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9 EE Allen, DH Bartlett Microbiology 148 (6), 1903-1913, 2002	247	2002
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria K Penn, C Jenkins, M Nett, DW Udwary, EA Gontang, RP McGlinchey, ... The ISME journal 3 (10), 1193-1203, 2009	234	2009
Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways RC Coates, S Podell, A Korobeynikov, A Lapidus, P Pevzner, ... PloS one 9 (1), e85140, 2014	199	2014
Compositional differences in particle‐associated and free‐living microbial assemblages from an extreme deep‐ocean environment EA Eloe, CN Shulse, DW Fadrosh, SJ Williamson, EE Allen, DH Bartlett Environmental microbiology reports 3 (4), 449-458, 2011	190	2011

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