| HiChIP: efficient and sensitive analysis of protein-directed genome architecture MR Mumbach, AJ Rubin, RA Flynn, C Dai, PA Khavari, WJ Greenleaf, ... Nature methods 13 (11), 919-922, 2016 | 1053 | 2016 |
| Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements MR Mumbach, AT Satpathy, EA Boyle, C Dai, BG Gowen, SW Cho, ... Nature genetics 49 (11), 1602-1612, 2017 | 481 | 2017 |
| Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation W Yuan, T Wu, H Fu, C Dai, H Wu, N Liu, X Li, M Xu, Z Zhang, T Niu, ... science 337 (6097), 971-975, 2012 | 323 | 2012 |
| TopDom: an efficient and deterministic method for identifying topological domains in genomes H Shin, Y Shi, C Dai, H Tjong, K Gong, F Alber, XJ Zhou Nucleic acids research 44 (7), e70-e70, 2016 | 290 | 2016 |
| Population-based 3D genome structure analysis reveals driving forces in spatial genome organization H Tjong, W Li, R Kalhor, C Dai, S Hao, K Gong, Y Zhou, H Li, XJ Zhou, ... Proceedings of the National Academy of Sciences 113 (12), E1663-E1672, 2016 | 192 | 2016 |
| Functional DNA demethylation is accompanied by chromatin accessibility K Pandiyan, JS You, X Yang, C Dai, XJ Zhou, SB Baylin, PA Jones, ... Nucleic acids research 41 (7), 3973-3985, 2013 | 97 | 2013 |
| SNF5 is an essential executor of epigenetic regulation during differentiation JS You, DD De Carvalho, C Dai, M Liu, K Pandiyan, XJ Zhou, G Liang, ... PLoS genetics 9 (4), e1003459, 2013 | 57 | 2013 |
| Avelumab combined with stereotactic ablative body radiotherapy in metastatic castration-resistant prostate cancer: the phase 2 ICE-PAC clinical trial EM Kwan, L Spain, A Anton, CL Gan, L Garrett, D Chang, E Liow, ... European urology 81 (3), 253-262, 2022 | 48 | 2022 |
| Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities C Dai, W Li, H Tjong, S Hao, Y Zhou, Q Li, L Chen, B Zhu, F Alber, ... Nature communications 7 (1), 1-11, 2016 | 43 | 2016 |
| Plasma cell–free DNA profiling of PTEN-PI3K-AKT pathway aberrations in metastatic castration-resistant prostate cancer EM Kwan, C Dai, H Fettke, C Hauser, MM Docanto, P Bukczynska, N Ng, ... JCO Precision Oncology 5, 622-637, 2021 | 28 | 2021 |
| Integrating many co-splicing networks to reconstruct splicing regulatory modules C Dai, W Li, J Liu, XJ Zhou BMC systems biology 6, 1-9, 2012 | 24 | 2012 |
| Genomic complexity predicts resistance to endocrine therapy and CDK4/6 inhibition in hormone receptor–positive (HR+)/HER2-negative metastatic breast cancer AA Davis, J Luo, T Zheng, C Dai, X Dong, L Tan, R Suresh, ... Clinical Cancer Research 29 (9), 1719-1729, 2023 | 22 | 2023 |
| Integrative analysis of many RNA-seq datasets to study alternative splicing W Li, C Dai, S Kang, XJ Zhou Methods 67 (3), 313-324, 2014 | 21 | 2014 |
| algorithm to identify frequent coupled modules from two-layered network series: application to study transcription and splicing coupling C Dai | 21 | 2012 |
| An integrative modular approach to systematically predict gene-phenotype associations MR Mehan, J Nunez-Iglesias, C Dai, MS Waterman, XJ Zhou BMC bioinformatics 11, 1-12, 2010 | 20 | 2010 |
| BRCA-deficient metastatic prostate cancer has an adverse prognosis and distinct genomic phenotype H Fettke, C Dai, EM Kwan, T Zheng, P Du, N Ng, P Bukczynska, ... EBioMedicine 95, 2023 | 13 | 2023 |
| Inducing pairwise gene interactions from time-series data by EDA based bayesian network C Dai, J Liu 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference, 7746-7749, 2006 | 13 | 2006 |
| Circulating cell-free DNA-based detection of tumor suppressor gene copy number loss and its clinical implication in metastatic prostate cancer X Dong, T Zheng, M Zhang, C Dai, L Wang, L Wang, R Zhang, Y Long, ... Frontiers in Oncology 11, 720727, 2021 | 10 | 2021 |
| Integrative analysis of many biological networks to study gene regulation W Li, C Dai, XJ Zhou, G Tseng, D Ghosh, XJ Zhou Integrating Omics Data 68, 2015 | 4 | 2015 |
| A simple method of inferring pairwise gene interactions from microarray time series data J Liu, B Ni, C Dai, N Wang 2005 International Conference on Machine Learning and Cybernetics 6, 3346-3351, 2005 | 3 | 2005 |