| Multiple wheat genomes reveal global variation in modern breeding S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa, J Brinton, ... Nature 588 (7837), 277-283, 2020 | 705 | 2020 |
| Ch IP‐Atlas: a data‐mining suite powered by full integration of public Ch IP‐seq data S Oki, T Ohta, G Shioi, H Hatanaka, O Ogasawara, Y Okuda, H Kawaji, ... EMBO reports 19 (12), e46255, 2018 | 670 | 2018 |
| Compound–protein interaction prediction with end-to-end learning of neural networks for graphs and sequences M Tsubaki, K Tomii, J Sese Bioinformatics 35 (2), 309-318, 2019 | 580 | 2019 |
| Semi-supervised local Fisher discriminant analysis for dimensionality reduction M Sugiyama, T Idé, S Nakajima, J Sese Machine learning 78, 35-61, 2010 | 382 | 2010 |
| Identification and characterization of the potential promoter regions of 1031 kinds of human genes Y Suzuki, T Tsunoda, J Sese, H Taira, J Mizushima-Sugano, H Hata, ... Genome research 11 (5), 677-684, 2001 | 374 | 2001 |
| High-dimensional and large-scale phenotyping of yeast mutants Y Ohya, J Sese, M Yukawa, F Sano, Y Nakatani, TL Saito, A Saka, ... Proceedings of the National Academy of Sciences 102 (52), 19015-19020, 2005 | 337 | 2005 |
| Transversing itemset lattices with statistical metric pruning S Morishita, J Sese Proceedings of the nineteenth ACM SIGMOD-SIGACT-SIGART symposium on …, 2000 | 316 | 2000 |
| A large-scale full-length cDNA analysis to explore the budding yeast transcriptome F Miura, N Kawaguchi, J Sese, A Toyoda, M Hattori, S Morishita, T Ito Proceedings of the National Academy of Sciences 103 (47), 17846-17851, 2006 | 283 | 2006 |
| Development of a real-time endoscopic image diagnosis support system using deep learning technology in colonoscopy M Yamada, Y Saito, H Imaoka, M Saiko, S Yamada, H Kondo, ... Scientific reports 9 (1), 14465, 2019 | 251 | 2019 |
| Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism PY Novikova, N Hohmann, V Nizhynska, T Tsuchimatsu, J Ali, G Muir, ... Nature genetics 48 (9), 1077-1082, 2016 | 201 | 2016 |
| Diverse transcriptional initiation revealed by fine, large‐scale mapping of mRNA start sites Y Suzuki, H Taira, T Tsunoda, J Mizushima‐Sugano, J Sese, H Hata, ... EMBO reports, 2001 | 197 | 2001 |
| Application of artificial intelligence technology in oncology: Towards the establishment of precision medicine R Hamamoto, K Suvarna, M Yamada, K Kobayashi, N Shinkai, M Miyake, ... Cancers 12 (12), 3532, 2020 | 172 | 2020 |
| KDD Cup 2001 report J Cheng, C Hatzis, H Hayashi, MA Krogel, S Morishita, D Page, J Sese ACM SIGKDD Explorations Newsletter 3 (2), 47-64, 2002 | 170 | 2002 |
| 5′-end SAGE for the analysis of transcriptional start sites S Hashimoto, Y Suzuki, Y Kasai, K Morohoshi, T Yamada, J Sese, ... Nature biotechnology 22 (9), 1146-1149, 2004 | 169 | 2004 |
| Approximating mutual information by maximum likelihood density ratio estimation T Suzuki, M Sugiyama, J Sese, T Kanamori New challenges for feature selection in data mining and knowledge discovery …, 2008 | 168 | 2008 |
| Mutual information estimation reveals global associations between stimuli and biological processes T Suzuki, M Sugiyama, T Kanamori, J Sese BMC bioinformatics 10, 1-12, 2009 | 151 | 2009 |
| Statistical significance of combinatorial regulations A Terada, M Okada-Hatakeyama, K Tsuda, J Sese Proceedings of the National Academy of Sciences 110 (32), 12996-13001, 2013 | 129 | 2013 |
| Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology RV Briskine, T Paape, R Shimizu‐Inatsugi, T Nishiyama, S Akama, J Sese, ... Molecular ecology resources 17 (5), 1025-1036, 2017 | 124 | 2017 |
| Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis S Akama, R Shimizu-Inatsugi, KK Shimizu, J Sese Nucleic acids research 42 (6), e46-e46, 2014 | 123 | 2014 |
| A hybrid space-filling and force-directed layout method for visualizing multiple-category graphs T Itoh, C Muelder, KL Ma, J Sese 2009 IEEE Pacific Visualization Symposium, 121-128, 2009 | 117 | 2009 |