| Radiogenomic analysis of F-18-fluorodeoxyglucose positron emission tomography and gene expression data elucidates the epidemiological complexity of colorectal cancer landscape EI Vlachavas, E Pilalis, O Papadodima, D Koczan, S Willis, S Klippel, ... Computational and Structural Biotechnology Journal 17, 177-185, 2019 | 76 | 2019 |
| An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism E Pilalis, A Chatziioannou, B Thomasset, F Kolisis Biotechnology and bioengineering 108 (7), 1673-1682, 2011 | 70 | 2011 |
| Control of anterior GR adient 2 (AGR 2) dimerization links endoplasmic reticulum proteostasis to inflammation M Maurel, J Obacz, T Avril, YP Ding, O Papadodima, X Treton, F Daniel, ... EMBO molecular medicine 11 (6), e10120, 2019 | 60 | 2019 |
| Epigenetics in breast cancer therapy—New strategies and future nanomedicine perspectives V Buocikova, I Rios-Mondragon, E Pilalis, A Chatziioannou, S Miklikova, ... Cancers 12 (12), 3622, 2020 | 53 | 2020 |
| Analyzing and visualizing genomic complexity for the derivation of the emergent molecular networks T Koutsandreas, I Binenbaum, E Pilalis, I Valavanis, O Papadodima, ... International Journal of Monitoring and Surveillance Technologies Research …, 2016 | 46 | 2016 |
| Regulated IRE1α-dependent decay (RIDD)-mediated reprograming of lipid metabolism in cancer A Almanza, K Mnich, A Blomme, CM Robinson, G Rodriguez-Blanco, ... Nature communications 13 (1), 2493, 2022 | 45 | 2022 |
| RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis V Singh, GD Kalliolias, M Ostaszewski, M Veyssiere, E Pilalis, P Gawron, ... Database 2020, baaa017, 2020 | 36 | 2020 |
| ANASTASIA: an automated metagenomic analysis pipeline for novel enzyme discovery exploiting next generation sequencing data T Koutsandreas, E Ladoukakis, E Pilalis, D Zarafeta, FN Kolisis, G Skretas, ... Frontiers in genetics 10, 469, 2019 | 30 | 2019 |
| The development of an angiogenic protein “signature” in ovarian cancer ascites as a tool for biologic and prognostic profiling SP Trachana, E Pilalis, NG Gavalas, K Tzannis, O Papadodima, M Liontos, ... PLoS One 11 (6), e0156403, 2016 | 30 | 2016 |
| Decitabine potentiates efficacy of doxorubicin in a preclinical trastuzumab-resistant HER2-positive breast cancer models V Buocikova, EM Longhin, E Pilalis, C Mastrokalou, S Miklikova, ... Biomedicine & Pharmacotherapy 147, 112662, 2022 | 22 | 2022 |
| Microarray analysis of survival pathways in human PC-3 prostate cancer cells R Tenta, H Katopodis, A Chatziioannou, E Pilalis, E Calvo, F Labrie, ... Cancer genomics & proteomics 4 (4), 309-317, 2007 | 16 | 2007 |
| KENeV: a web-application for the automated reconstruction and visualization of the enriched metabolic and signaling super-pathways deriving from genomic experiments E Pilalis, T Koutsandreas, I Valavanis, E Athanasiadis, G Spyrou, ... Computational and structural biotechnology journal 13, 248-255, 2015 | 14 | 2015 |
| Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity I Binenbaum, HAT Atamni, G Fotakis, G Kontogianni, T Koutsandreas, ... BMC genomics 21, 1-13, 2020 | 11 | 2020 |
| Prioritized functional analysis of biological experiments using resampling and noise control methodologies ED Pilalis, AA Chatziioannou 13th IEEE International Conference on BioInformatics and BioEngineering, 1-3, 2013 | 10 | 2013 |
| Escherichia coli genome-wide promoter analysis: Identification of additional AtoC binding target elements E Pilalis, AA Chatziioannou, AI Grigoroudis, CA Panagiotidis, FN Kolisis, ... BMC genomics 12, 1-17, 2011 | 9 | 2011 |
| Decitabine-induced DNA methylation-mediated transcriptomic reprogramming in human breast cancer cell lines; the impact of DCK overexpression V Buocikova, S Tyciakova, E Pilalis, C Mastrokalou, M Urbanova, ... Frontiers in Pharmacology 13, 991751, 2022 | 8 | 2022 |
| A computational pipeline for the extraction of actionable biological information from NGS-phage display experiments A Vekris, E Pilalis, A Chatziioannou, KG Petry Frontiers in Physiology 10, 1160, 2019 | 8 | 2019 |
| Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice HJ Abu-Toamih-Atamni, IM Lone, I Binenbaum, R Mott, E Pilalis, ... Mammalian Genome 35 (1), 31-55, 2024 | 7 | 2024 |
| Integration of Raman spectra with transcriptome data in glioblastoma multiforme defines tumour subtypes and predicts patient outcome PJ Le Reste, E Pilalis, M Aubry, M McMahon, L Cano, A Etcheverry, ... Journal of Cellular and Molecular Medicine 25 (23), 10846-10856, 2021 | 7 | 2021 |
| Studying microarray gene expression data of schizophrenic patients for derivation of a diagnostic signature through the aid of machine learning M Logotheti, E Pilalis, N Venizelos, F Kolisis, A Chatziioannou Biom Biostat Int J 4 (5), 00106, 2016 | 7 | 2016 |