| STAR: ultrafast universal RNA-seq aligner A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ... Bioinformatics 29 (1), 15-21, 2013 | 42687 | 2013 |
| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17186 | 2012 |
| Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 5732 | 2012 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011 | 680 | 2011 |
| High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression P Batut, A Dobin, C Plessy, P Carninci, TR Gingeras Genome research 23 (1), 169-180, 2013 | 226 | 2013 |
| Chaisson,. and Gingeras A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut TR, 2013 | 183* | 2013 |
| Genome organization controls transcriptional dynamics during development PJ Batut, XY Bing, Z Sisco, J Raimundo, M Levo, MS Levine Science 375 (6580), 566-570, 2022 | 158 | 2022 |
| Transcriptional coupling of distant regulatory genes in living embryos M Levo, J Raimundo, XY Bing, Z Sisco, PJ Batut, S Ryabichko, T Gregor, ... Nature 605 (7911), 754-760, 2022 | 111 | 2022 |
| Ultrafast universal RNA-seq aligner., 2013, 29 A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ... DOI: https://doi. org/10.1093/bioinformatics/bts635, 15-21, 0 | 98 | |
| RAMPAGE: Promoter Activity Profiling by Paired‐End Sequencing of 5′‐Complete cDNAs P Batut, TR Gingeras Current protocols in molecular biology 104 (1), 25B. 11.1-25B. 11.16, 2013 | 81 | 2013 |
| Evidence for transcript networks composed of chimeric RNAs in human cells S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ... PLoS One 7 (1), e28213, 2012 | 67 | 2012 |
| STAR: ultrafast universal RNA-seq aligner. Bioinforma. Oxf. Engl. 29, 15–21 A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ... | 58 | 2013 |
| 1074 and Gingeras A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ... TR, 2013 | 26* | 2013 |
| Conserved noncoding transcription and core promoter regulatory code in early Drosophila development PJ Batut, TR Gingeras Elife 6, e29005, 2017 | 13 | 2017 |
| SnapShot: the regulatory genome XY Bing, PJ Batut, M Levo, M Levine, J Raimundo Cell 182 (6), 1674-1674. e1, 2020 | 5 | 2020 |
| Promoter Evolution in Drosophila: Non-Coding Transcription & Transposon-Driven Innovation P Batut Cold Spring Harbor Laboratory, 2014 | | 2014 |
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