| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 36067 | 2010 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17120 | 2019 |
| Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ... Proceedings of the national academy of sciences 108 (supplement_1), 4516-4522, 2011 | 9128 | 2011 |
| Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, J Huntley, N Fierer, ... The ISME journal 6 (8), 1621-1624, 2012 | 8980 | 2012 |
| Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013 | 8904 | 2013 |
| Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 8559 | 2012 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6, 1-17, 2018 | 4317 | 2018 |
| Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ... Nature methods 10 (1), 57-59, 2013 | 4026 | 2013 |
| Soil bacterial and fungal communities across a pH gradient in an arable soil J Rousk, E Bååth, PC Brookes, CL Lauber, C Lozupone, JG Caporaso, ... The ISME journal 4 (10), 1340-1351, 2010 | 4012 | 2010 |
| PyNAST: a flexible tool for aligning sequences to a template alignment JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ... Bioinformatics 26 (2), 266-267, 2010 | 3887 | 2010 |
| Current understanding of the human microbiome JA Gilbert, MJ Blaser, JG Caporaso, JK Jansson, SV Lynch, R Knight Nature medicine 24 (4), 392-400, 2018 | 2458 | 2018 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2432 | 2017 |
| Cross-biome metagenomic analyses of soil microbial communities and their functional attributes N Fierer, JW Leff, BJ Adams, UN Nielsen, ST Bates, CL Lauber, S Owens, ... Proceedings of the National Academy of Sciences 109 (52), 21390-21395, 2012 | 1736 | 2012 |
| Improved bacterial 16S rRNA gene (V4 and V4-5) and fungal internal transcribed spacer marker gene primers for microbial community surveys W Walters, ER Hyde, D Berg-Lyons, G Ackermann, G Humphrey, ... Msystems 1 (1), 10.1128/msystems. 00009-15, 2016 | 1656 | 2016 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1620 | 2018 |
| Species-level functional profiling of metagenomes and metatranscriptomes EA Franzosa, LJ McIver, G Rahnavard, LR Thompson, M Schirmer, ... Nature methods 15 (11), 962-968, 2018 | 1410 | 2018 |
| Using QIIME to analyze 16S rRNA gene sequences from microbial communities J Kuczynski, J Stombaugh, WA Walters, A González, JG Caporaso, ... Current protocols in microbiology 27 (1), 1E. 5.1-1E. 5.20, 2012 | 1396 | 2012 |
| Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ... Microbiome 5, 1-16, 2017 | 1361 | 2017 |
| Moving pictures of the human microbiome JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ... Genome biology 12, 1-8, 2011 | 1350 | 2011 |
| Examining the global distribution of dominant archaeal populations in soil ST Bates, D Berg-Lyons, JG Caporaso, WA Walters, R Knight, N Fierer The ISME journal 5 (5), 908-917, 2011 | 1329 | 2011 |