| A practical guide to building owl ontologies using protégé 4 and co-ode tools edition1. 2 M Horridge, S Jupp, G Moulton, A Rector, R Stevens, C Wroe The university of Manchester 107, 2009 | 948 | 2009 |
| Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ... Nucleic acids research 44 (D1), D746-D752, 2016 | 644 | 2016 |
| Expression Atlas update: from tissues to single cells I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ... Nucleic acids research 48 (D1), D77-D83, 2020 | 533 | 2020 |
| The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation SA Lambert, L Gil, S Jupp, SC Ritchie, Y Xu, A Buniello, A McMahon, ... Nature Genetics 53 (4), 420-425, 2021 | 457 | 2021 |
| Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics M Ghoussaini, E Mountjoy, M Carmona, G Peat, EM Schmidt, A Hercules, ... Nucleic acids research 49 (D1), D1311-D1320, 2021 | 421 | 2021 |
| Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ... Nucleic acids research 42 (D1), D926-D932, 2014 | 381 | 2014 |
| The EBI RDF platform: linked open data for the life sciences S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ... Bioinformatics 30 (9), 1338-1339, 2014 | 301 | 2014 |
| A compendium of uniformly processed human gene expression and splicing quantitative trait loci N Kerimov, JD Hayhurst, K Peikova, JR Manning, P Walter, L Kolberg, ... Nature genetics 53 (9), 1290-1299, 2021 | 251 | 2021 |
| The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ... Nucleic acids research 48 (D1), D704-D715, 2020 | 233 | 2020 |
| A new Ontology Lookup Service at EMBL-EBI. S Jupp, T Burdett, C Leroy, HE Parkinson SWAT4LS 2, 118-119, 2015 | 165 | 2015 |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017 | 153 | 2017 |
| Ontology mapping for semantically enabled applications I Harrow, R Balakrishnan, E Jimenez-Ruiz, S Jupp, J Lomax, J Reed, ... Drug discovery today 24 (10), 2068-2075, 2019 | 70 | 2019 |
| Ordo: an ontology connecting rare disease, epidemiology and genetic data D Vasant, L Chanas, J Malone, M Hanauer, A Olry, S Jupp, PN Robinson, ... Proceedings of ISMB 30, 2014 | 70 | 2014 |
| A simple standard for sharing ontological mappings (SSSOM) N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ... Database 2022, baac035, 2022 | 65 | 2022 |
| Populous: a tool for building OWL ontologies from templates S Jupp, M Horridge, L Iannone, J Klein, S Owen, J Schanstra, ... BMC bioinformatics 13, 1-12, 2012 | 64 | 2012 |
| eQTL Catalogue: a compendium of uniformly processed human gene expression and splicing QTLs N Kerimov, JD Hayhurst, K Peikova, JR Manning, P Walter, L Kolberg, ... BioRxiv, 2020.01. 29.924266, 2020 | 62 | 2020 |
| Ten simple rules for selecting a bio-ontology J Malone, R Stevens, S Jupp, T Hancocks, H Parkinson, C Brooksbank PLoS computational biology 12 (2), e1004743, 2016 | 56 | 2016 |
| Developing a kidney and urinary pathway knowledge base S Jupp, J Klein, J Schanstra, R Stevens Journal of biomedical semantics 2, 1-17, 2011 | 50 | 2011 |
| Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation S Sarntivijai, D Vasant, S Jupp, G Saunders, AP Bento, D Gonzalez, ... Journal of biomedical semantics 7, 1-11, 2016 | 48 | 2016 |
| The KUPKB: a novel Web application to access multiomics data on kidney disease J Klein, S Jupp, P Moulos, M Fernandez, B Buffin‐Meyer, A Casemayou, ... The FASEB Journal 26 (5), 2145-2153, 2012 | 44 | 2012 |
